Schistosoma mansoni: Smp_045940
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Entry
Smp_045940 CDS
T01095
Name
(RefSeq) putative procollagen-lysine,2-oxoglutarate 5-dioxygenase
KO
K15174
RNA polymerase II-associated factor 1
Organism
smm
Schistosoma mansoni
Brite
KEGG Orthology (KO) [BR:
smm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
smm03021
]
Smp_045940
Transcription machinery [BR:
smm03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
PAF1 complex
Smp_045940
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Paf1
2OG-FeII_Oxy
PKD_3
FAD_binding_4
Motif
Other DBs
NCBI-GeneID:
8351286
NCBI-ProteinID:
XP_018655001
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Position
W:36998631..37032186
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AA seq
921 aa
AA seq
DB search
MTLFQSSEKANDPLDSSQDRGKEFKTESLLCRLKYQNNLPELPFDPKFLVYPLEPSRFLQ
YVATSLERNYKHELLTETDVGVEVDLIDPDVFRIDKRATLHPDDERLLEDEAPTFVNARK
SRHQKLGYNVKRHLNEEIVYRDRESQINAIEETFKAAEKPIHKHYSKPNVHALEVLPVLP
DFTLWRYPCAQVIFDDDPSRKNKTTTEQKEEVNQAMIRGMVDESGDHFVAYFLPTEQTKQ
LRRLDAENQTPYTEDAAYEYELTREYNWNVKNKTMANYEENYFFCFRKDGVYYNELETRV
RLSKRRKLNQSGTNVGALQAPKTRLIVHHRDFTDEELKAQTDHVLVLTVATEKNDALQRF
LRSCNLNGFKVKVLGEGSHWKGGHVAKSTGGGQKVNLLKEELAKGDYKPDQLILFVDSYD
VVFMQNVAKLLEEYEKFKSKVIFSAEEFCWPQPSLQSSYPEVKPGEKRYLNSGGFIGPTA
NLIKIVNHEPIKDDDDDQLYYTKIFLDSTSRTLYDIELDKTSRIFQNLNGAFSDVELHFN
DVTGYLFNKIFSTTPIIAHGNGPIKVEFNSLSNYLAYSWSPTKNCQQCDEDNIEIQDILD
YPLVVMGIFIEQGTPFIERFFERIAALSYPKSRLHVVGHMAENSRFQSAVAESFNQTFGH
QYFSVNWLEENLDEETARRKNVFMFVDNQMSFGYLTDANNYTKGKLHNDLWQTMDNPQDW
EEQYIHPQYFNFAKPEVTMTDIAQPCPDVFWFPLVSETFCKHLIEEVENYGQWSTGDNYD
PRLEGGYENVPTRDIHMRQIGWEEHWLHVLEKYVHKIQKKLFQGYDDKPWARMNFVVRYK
PDEQPSLRPHHDASSYTINIGLNQPGKDYKGGGIRYNRYNCSIVDTRVGWALVSPGRVTH
LHEGLPTTGGTRYIFVTFVNP
NT seq
2766 nt
NT seq
+upstream
nt +downstream
nt
atgacattatttcagagttctgagaaagctaatgatccacttgattcttcacaagatcgt
gggaaggagttcaaaactgaatctcttttatgtcgtctgaagtatcagaataatttgcca
gagctccctttcgaccctaaattcttagtatatcctctcgaaccttccagattccttcaa
tatgtggctacctctctggaaaggaattataagcatgaattactcacggaaacagatgtg
ggagttgaggttgacttaattgatcctgatgtttttcgaattgacaaaagagcgactctt
catccggatgatgaacgactcttggaagatgaggctcctacttttgtcaatgcacgtaaa
tctagacatcaaaaacttgggtacaatgttaaacgccatctcaatgaagagatcgtgtat
cgtgatcgcgaaagccagatcaacgccattgaggaaacgttcaaagcagctgaaaagcct
attcataagcattatagtaaaccaaacgtccacgctttggaggtacttccagtattaccg
gacttcacattatggagatatccatgtgcacaggttatttttgatgatgatccttctcgt
aaaaataaaactaccaccgaacaaaaggaggaggtgaatcaagcgatgattcgtggtatg
gtagatgaatctggcgaccatttcgttgcttacttcctaccaactgaacagactaaacaa
ttacgtcgtttggatgctgaaaatcaaacaccatatactgaagatgctgcctatgaatat
gaacttacacgagagtacaattggaatgtcaaaaataaaactatggccaattatgaagaa
aattattttttctgttttcgtaaagatggagtttactataacgaattagagaccagagtc
cgtctcagtaaacgacgtaaattaaaccagtctggtactaatgttggcgctctacaagcc
cccaaaactcgtttgattgttcatcatcgagatttcacagatgaagaattgaaggctcaa
actgaccatgtcttggttctaaccgtggcaacggagaaaaacgatgctctacagagattc
ctgaggtcatgtaacttgaatggatttaaagtgaaggtgcttggagaaggcagtcattgg
aaaggtgggcatgttgcgaagtcaactggtggtggacagaaagtcaatttgttgaaagaa
gaactagctaaaggtgattacaaaccagaccaacttattctgtttgttgacagttatgac
gttgttttcatgcaaaatgtggctaagttacttgaggaatatgaaaagtttaaatccaaa
gttatattttctgcggaggaattttgttggccacaaccaagcttacagagctcatatcct
gaagtaaaacctggtgaaaaacgttatttaaactctggcgggtttattggaccaacagct
aatttaattaaaattgtcaatcacgaacccattaaagatgatgatgatgatcaactatat
tatacaaagatatttctggactcaacgtcaagaacattgtatgatattgaacttgacaaa
acttcaagaatttttcaaaatctaaatggagcattcagtgatgtggaattacattttaat
gatgtaacaggatatctatttaataaaatattctctacaactccaattatcgctcatggt
aatggaccaataaaggttgaattcaattcactgtcaaattaccttgcatattcctggagc
cctacaaaaaactgtcaacagtgtgacgaagataacattgaaattcaggatatattagac
tacccactagtggtcatgggaatcttcattgaacagggaacaccattcatcgaaagattc
tttgaacgaatagcagctttgtcctatccaaagtccaggcttcatgtagttggtcatatg
gcggagaacagtagatttcagtctgcagtagcggagtcgttcaatcaaacatttggacac
caatacttttcagtcaactggcttgaggagaatctagatgaagaaactgcaagaaggaaa
aatgtttttatgttcgtggataatcaaatgagcttcggatatctaaccgatgccaataac
tatacgaaaggtaaactgcacaacgacttgtggcaaacgatggacaatcctcaagactgg
gaagaacaatacatacacccgcaatacttcaactttgcgaaacctgaagtgacaatgaca
gatattgcacagccatgcccagacgtattttggtttcctttagtatcagaaactttctgc
aaacatcttatagaagaagtagaaaattatggacaatggtctacaggagataactatgac
ccacgattggaaggaggatacgaaaatgtaccaacaagagacattcacatgcgccaaatc
ggttgggaggagcactggctgcatgttctagaaaaatacgtccataagatccaaaagaaa
ctctttcaagggtatgatgataagccatgggctcgcatgaattttgtcgtcagatacaaa
ccagacgaacaaccttccttgagacctcaccacgatgcatcctcttacacaattaatatt
ggactaaaccagcctggaaaagactacaaaggaggtggaatacgctacaatcgatacaac
tgctcaatagtagatacgcgtgttgggtgggcattggttagtccaggaagagtgactcat
ctacacgaaggactaccaacgacaggagggacacggtacatcttcgttacttttgtcaat
ccctaa
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