KEGG   Schistosoma mansoni: Smp_049520
Entry
Smp_049520        CDS       T01095                                 
Name
(RefSeq) putative wd repeat protein SL1-17
  KO
K12602  WD repeat-containing protein 61
Organism
smm  Schistosoma mansoni
Pathway
smm03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:smm00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Smp_049520
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:smm03019]
    Smp_049520
Messenger RNA biogenesis [BR:smm03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Ski complex
     Smp_049520
SSDB
Motif
Pfam: WD40 WDR55 WD40_Prp19 WD40_WDHD1_1st WD40_CDC20-Fz Beta-prop_EML_2 EIF3I Beta-prop_TEP1_2nd WD40_MABP1-WDR62_2nd Beta-prop_CAF1B_HIR1 Beta-prop_WDR90_POC16_2nd ANAPC4_WD40 Beta-prop_RIG_2nd Beta-prop_IFT122_1st WD40_MABP1-WDR62_1st Beta-prop_EML Beta-prop_WDR75_1st WDR90_beta-prop_4th WD40_RFWD3 Beta-prop_Vps41 Beta-prop_WDR19_1st Beta-prop_EIPR1 NBCH_WD40 RMC1_N Beta-prop_SPT8 Beta-prop_TEP1_C Beta-prop_SCAP Beta-prop_NUP159_NUP214 Beta-prop_DCAF4 Beta-prop_IFT140_1st eIF2A Beta-prop_HPS5 Beta-prop_WDR35_TULP_N PROPPIN Beta-prop_RIG_1st PEP5_VPS11_N WD40_like Ge1_WD40 Beta-prop_NWD2_C Beta-prop_ELP1_1st WDR54 Beta-prop_IFT140_2nd WD_LRWD1 CFAP43_N Beta-prop_WDR11_2nd Beta-prop_IFT122_2nd Peptidase_S9_N Proteasome_A_N
Other DBs
NCBI-GeneID: 8341489
NCBI-ProteinID: XP_018649105
LinkDB
Position
1:49816016..49825685
AA seq 299 aa
MYSSYFTIAHKEGIWCCTWGENRNRNKQYIITGSLDNGLIAWEWTNSQLKCLYQFEGHRL
GVISVDINSTGTLAASSSLDSQILLWDLETGRLTKTYDGDPADTWTIAFSPDSRFLATGS
HTGCVNMINVQTAQKEGSIQLEGKFVYSLAYISDGSKLAAGTINGLVSICDLETGSVQFL
DGHATPVRSVSFSPDGRLLASASDDKQIKVFDVRDGRLVIPSLNGHKGWVVSVDFASDNR
HLVTASTDCSVRIWDLASKEEKHCFNTHEDQVWCARYSPQGNNIISVGDDRSIMIYQCA
NT seq 900 nt   +upstreamnt  +downstreamnt
atgtattcttcatatttcactatagcgcataaagaaggaatatggtgctgcacatggggt
gaaaatcggaacagaaataaacagtacattattacaggttctttggataatggcctcatt
gcttgggagtggactaatagtcagttaaaatgtctttatcaatttgaaggacataggttg
ggtgtgatttcggttgacataaattcaacaggtacattagcagcatccagcagtcttgat
agccagattttattatgggatctggaaacaggaagattaacgaaaacatatgacggtgat
ccagctgatacctggactattgctttttctcctgattcgcgtttcctagcaactggaagt
catactggttgtgtaaatatgattaatgtacaaactgctcagaaagagggttctattcaa
ttagaggggaaattcgtgtacagccttgcttatatctctgacggatctaagctagctgct
ggaacaatcaatgggcttgtcagcatttgtgatttagaaacagggagtgttcagtttttg
gatggacatgccacaccggtacgctcagtttcgttttcacctgatggacgtctattagct
tctgcatctgatgataaacaaattaaagtttttgatgtacgcgatggtcgactagttatc
cctagtttaaatggtcataaaggatgggttgtatcggtagacttcgcttcagataatcga
catcttgtcacagcatccactgattgttctgttcgaatctgggatctagcatcgaaagaa
gaaaaacattgttttaatacacatgaagatcaggtatggtgcgctcgttatagtcctcaa
ggaaataatattatatctgtaggagatgatagatctatcatgatttatcaatgtgcttaa

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