Schistosoma mansoni: Smp_056640
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Entry
Smp_056640 CDS
T01095
Name
(RefSeq) huntingtin interacting protein-related
KO
K12821
pre-mRNA-processing factor 40
Organism
smm
Schistosoma mansoni
Pathway
smm03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
smm00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
Smp_056640
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
smm03041
]
Smp_056640
Spliceosome [BR:
smm03041
]
Complex A
U1 snRNP components
U1 related factors
Smp_056640
Complex B
Smp_056640
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FF
WW
WW_TCERG1
FF_RHG35_4th
WW_2
Motif
Other DBs
NCBI-GeneID:
8345017
NCBI-ProteinID:
XP_018652324
UniProt:
G4VH57
LinkDB
All DBs
Position
4:23935433..23945967
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AA seq
801 aa
AA seq
DB search
MAGYPHHFVTAHLGYPGYAHAAYVPASIPNPANSVTQLSAAQINAGWVEHHSHDGRKYYY
NTFTQQTTWEKPQELKTQREKILCNCPWKEFKSENGKPYYFNENTKQSIWIKPQELIDAE
NQAAACNAAANSTVPEQPPSMPPVTPCTPATPKDDVNKPPEPSEIERAMKATLASFDTSD
TGPSSISIPLPPEKVGDSDKDESDEEKPVSNPHITTFSPNTQTVPEYKTRAEMAEGLRRL
FRDCNVPGGATWEQALKLISGDPRYSILRTFNEKKQIFNVYKTQRLKEEREEQRIRIKRA
KEDLEKYLLKCNKLHSTMSYRRVDQLLSDTKEWTDVPDRDRREIFDDVMQEVGKREREEA
KILRKRNVRVFNEILSEMLDLTYRTTWSEAQQMLLDNTRFTGDVDLQNLDKEDALVCFEE
HICMLEQEHDEDKERERRRQKREQRKNREAFIVLLDELHEQKLLTSMSLWKDLYHIINKD
DRFHKMLAQRGSTPLDLFKFYVEALRARFPAEKKIIKEILKYNCTPIDLSVSYEDFCSII
SSDERSKGIDEGNMRMTYDGLLEKAQGRERERQRDDARRMRKLEQNFCEMLTNSSFIQSN
TSWEEVREKLSDHPAFKGLSLESERIRLFKEYIISIDNSNEDAHRSRKDKHLCERSASIQ
DVEKDVDAMKDQKKKQTVSPSPAPSEHSHTRRSDDERGSSQKRKHRKSKKSKHRKSKHHK
HHKNTDKRQDEELEEGEAADDDDEDDEAANPQTGDRASGSKRHHHHRRGQRSRTSDPEDG
EEVESTSDGEFCDRDSKRKRR
NT seq
2406 nt
NT seq
+upstream
nt +downstream
nt
atggcaggttatcctcatcattttgttactgctcaccttggttatcctggttatgctcac
gcagcctacgtgcctgcgtcgattcctaatccagctaactctgtcacccagttgtcagct
gcccaaatcaatgcaggttgggtagagcaccattctcatgatgggagaaaatactactat
aatacattcactcaacagacgacttgggaaaaacctcaagagttgaagactcagcgtgag
aaaatactttgcaactgtccatggaaagagtttaaatccgaaaacggaaaaccttactat
tttaatgagaatacaaaacaatcaatatggatcaaaccgcaagaacttatagacgctgaa
aaccaagcagccgcctgtaatgcagctgcgaattctacggtccccgaacaaccaccaagt
atgcctccggttacaccgtgtacaccagccaccccaaaagatgacgttaataagcctcct
gagccttcagaaatagaaagggcaatgaaggcaactctggcctcttttgatacgtcagat
actggaccttcatcaatttcgattccactacctccggaaaaagtaggtgacagtgataaa
gatgaaagtgacgaagagaagcctgtatctaatccacatataactacattttcaccaaat
actcagacagtgccagaatataagacccgagcagaaatggcagaaggtcttaggaggctt
ttcagggattgcaatgtccctggtggggctacgtgggagcaagcactaaagttaatctcc
ggggatcctcgttactccatcttgaggacgtttaatgaaaaaaagcaaatatttaatgtt
tacaaaactcaaaggttaaaagaagaacgcgaggagcaaagaataagaattaaaagggcg
aaagaggatctagaaaagtatcttctaaaatgcaataagctgcactcaactatgtcatac
cgtagagtagatcaactactgtcggacacgaaggaatggactgatgtccccgatcgagat
cgccgtgaaatattcgatgatgtcatgcaagaggtaggtaagcgtgaacgagaagaagct
aagattttgcgaaaaaggaatgtacgagtatttaatgaaattcttagtgagatgcttgat
cttacatatcggacgacctggagcgaagcacaacaaatgctgcttgataataccagattc
actggagatgtggatttacaaaacttagataaagaggatgcccttgtctgttttgaagag
catatttgcatgcttgaacaagagcacgacgaagataaagaacgcgaacgtcggagacaa
aaaagggaacaacgaaagaatcgagaagcattcatagttttacttgatgaattgcacgaa
cagaaattactcacttctatgtctctatggaaagatctataccatataataaacaaagat
gatcgatttcacaaaatgcttgctcaacgtggttctactccattggatttatttaagttc
tatgttgaagcattaagagctcgtttcccagctgagaagaagattatcaaagagatttta
aaatacaactgtacaccgatcgacttgtctgtttcatacgaagatttttgttcaataata
agctctgatgaacgcagcaaaggaatagatgaaggaaatatgcgtatgacgtatgacggt
ctactagaaaaagctcaaggtcgtgaacgtgaacgccaaagagatgatgctaggcgtatg
agaaaacttgaacaaaacttctgtgaaatgcttacaaattcctccttcattcagtccaat
actagttgggaagaagttcgagaaaaattgagtgaccatcctgccttcaaaggtttgtcg
ttggaatcagaaaggattcgactctttaaagagtatattatttcaattgacaactcaaat
gaagacgctcatcggtctcgtaaagataaacatttatgcgagaggtctgcttctattcaa
gatgttgaaaaagatgtcgatgcaatgaaagatcagaagaaaaaacaaactgtttcccct
tccccagctccttcagaacatagtcatactcgtaggtcggacgatgaaaggggatcatca
cagaagcgtaaacatcgtaaatcaaagaaatcaaaacatcgcaaatcaaagcaccataaa
catcacaaaaatacagacaagcgtcaagatgaagaattagaagaaggagaagctgctgat
gatgatgacgaggatgatgaggctgcgaatcctcaaactggtgatcgtgccagtggtagt
aaacgtcatcatcatcatcgacgtggccaacgctctcggacgtctgaccctgaggatggt
gaagaggtggaaagtactagtgatggagaattttgtgaccgtgattcaaaacgtaaaaga
cgttag
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