Schistosoma mansoni: Smp_056860
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Entry
Smp_056860 CDS
T01095
Name
(RefSeq) snf5, putative
KO
K11648
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1
Organism
smm
Schistosoma mansoni
Pathway
smm03082
ATP-dependent chromatin remodeling
smm03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
smm00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
Smp_056860
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
Smp_056860
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
smm01009
]
Smp_056860
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
smm03021
]
Smp_056860
03036 Chromosome and associated proteins [BR:
smm03036
]
Smp_056860
Protein phosphatases and associated proteins [BR:
smm01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
Smp_056860
Transcription machinery [BR:
smm03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
Smp_056860
SWI/SNF complex
Smp_056860
Chromosome and associated proteins [BR:
smm03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
Smp_056860
PBAF complex
Smp_056860
SWI/SNF complex
Smp_056860
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF5
INI1_DNA-bd
CRC_subunit
DUF1285_N
Motif
Other DBs
NCBI-GeneID:
8345044
NCBI-ProteinID:
XP_018647300
LinkDB
All DBs
Position
Unknown
AA seq
447 aa
AA seq
DB search
METVFRYGEKPIEFQLESDGEYFYLASEVGRYLRLFRKELFKKYPNLWKRLVTPEEKEKL
IQMGLATPITATNAMLLRTYEVNEIICDQDRLADLKSGELISKDCSSSSNNLNMNSSNLR
NFNSNATPKVSAGFASVGRTSLGSSTNSATSATLPGVMNTSGAIDHTTASGNFKSRRDSR
WLGVGSTPNTSFHLDSVPCPTPISRLRTARQTSKSFTFPFCLDDSDPIAFHENARQPECL
VPIRLDIECDGVKLRDCFTWNRNEQLITLEQMAEVLCDDLDLNPINFVPAIVNAMRQQID
AHPMNDFLVGQTDTRVIIRLNIHVGNISLVDQFEWDLSEPNNSPEQFASRLCAELGLGGE
FVTAVAYSIRGQLAWHQKIYAFSESPLPTVDIVFRNSNEADQWSPVVEVLTDAEMEKKIR
DQDRNTSLKEIADNIGLIEITFLNGQF
NT seq
1344 nt
NT seq
+upstream
nt +downstream
nt
atggaaacagtcttccgctacggagaaaagccgatcgagtttcagctggagtctgacggt
gaatacttttacttagcatcagaagtgggtcgatatctgcgcttatttcgtaaagaatta
tttaaaaaatatccaaatttatggaaacggttagttactccagaagaaaaagagaaatta
attcaaatgggattggcaactcctataactgctactaatgctatgttgttgcgtacatat
gaggtcaatgaaatcatttgcgaccaagatcggttagcagatttaaaaagtggggagctt
atttcaaaagactgctcatcaagctctaataatttaaatatgaactccagtaatttacga
aatttcaactcgaatgcaactcctaaagtgagtgctgggttcgcatctgttggtcgaaca
agtcttggttcaagtactaattcggcgacgtcagcaacgttaccaggtgttatgaacact
tccggtgctattgatcacacaactgcaagtggaaattttaagtcaagaagagatagcagg
tggcttggtgttggttcaactccaaatacatcatttcatttggactcagttccttgtcca
actcctatcagtcgattgagaactgccagacagacaagtaaatcatttacattccctttt
tgtttggatgattctgatccaattgcatttcatgagaatgcacgtcaaccggaatgttta
gtaccaattcgtttagatatagaatgtgatggtgttaaactacgtgattgttttacatgg
aatcgtaatgaacaattaattacattggaacaaatggctgaagtactttgtgatgattta
gacttgaatccaataaattttgttccagctattgtgaatgctatgagacaacagattgat
gctcatcccatgaatgattttctagttggacaaactgatacacgagttattattcgttta
aatatacatgtaggcaatatttctttagtggatcaatttgaatgggatctttctgaacca
aacaattcaccggaacaatttgcttcaagactttgtgctgaattaggtttaggtggagaa
tttgttacagctgttgcatatagtattcgtggacaacttgcttggcatcagaaaatttat
gctttcagtgaatctcctttaccgacagtcgatatagttttccgtaattcaaatgaagct
gatcaatggagtccagttgttgaagttcttactgatgcagaaatggagaaaaagatacgc
gatcaagatcgtaacaccagcctaaaagagatcgctgataatattggactaattgaaatt
accttcctaaatggtcaattttaa
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