KEGG   Schistosoma mansoni: Smp_074230
Entry
Smp_074230        CDS       T01095                                 
Name
(RefSeq) putative dna-directed RNA polymerase II
  KO
K03012  DNA-directed RNA polymerase II subunit RPB4
Organism
smm  Schistosoma mansoni
Pathway
smm03020  RNA polymerase
smm03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:smm00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    Smp_074230
  09124 Replication and repair
   03420 Nucleotide excision repair
    Smp_074230
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:smm03021]
    Smp_074230
   03400 DNA repair and recombination proteins [BR:smm03400]
    Smp_074230
Transcription machinery [BR:smm03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol II specific subunits
     Smp_074230
DNA repair and recombination proteins [BR:smm03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      Smp_074230
SSDB
Motif
Pfam: RNA_pol_Rpb4 EF-G-binding_N Tfb4
Other DBs
NCBI-GeneID: 8346281
NCBI-ProteinID: XP_018652863
UniProt: G4VLA9
LinkDB
Position
6:536365..538876
AA seq 140 aa
MSQMHAVADDFDASELKFSKDFENADTLMLAEVKILLEHRKEQNENATIHELELSPVFTK
TLNYVTQFSKFNNRETIESVRNLLTQKRFHNFELASLANLLPDTAEESKALLPSLDSPRF
TEEELQQLLDEIQSKRSFQS
NT seq 423 nt   +upstreamnt  +downstreamnt
atgtcacaaatgcatgcagtagctgatgatttcgatgcatctgaattgaaattctctaaa
gattttgagaacgccgatacattaatgcttgctgaagttaaaatattgttggaacataga
aaagaacaaaatgaaaatgcaacaatccatgaacttgaattatcaccagtatttacaaaa
acattaaattatgtaacacaattttccaaatttaataatcgtgaaacaatcgaaagtgta
cgaaaccttttaacacaaaaacgatttcataattttgaattagcttcattggctaattta
ttaccggatacagcagaagaaagtaaagcattattaccaagtttagatagtccacgtttt
acagaagaggaattacaacaattattagatgaaatacaatctaaacgaagttttcaatca
taa

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