Schistosoma mansoni: Smp_074370
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Entry
Smp_074370 CDS
T01095
Name
(RefSeq) putative pre-mRNA splicing factor
KO
K12816
pre-mRNA-processing factor 17
Organism
smm
Schistosoma mansoni
Pathway
smm03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
smm00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
Smp_074370
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
smm03041
]
Smp_074370
Spliceosome [BR:
smm03041
]
Complex C
Other components
Step II factors
Smp_074370
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_CDC20-Fz
WD40_WDHD1_1st
EIF3I
Beta-prop_EML_2
WDR55
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_EML
Beta-prop_TEP1_C
Beta-prop_IFT122_1st
WD40_RFWD3
Beta-prop_SPT8
WD40_MABP1-WDR62_1st
Beta-prop_WDR75_1st
ANAPC4_WD40
Beta-prop_RIG_2nd
Beta-prop_EIPR1
Beta-prop_DCAF4
WDR90_beta-prop_4th
WDR54
NBCH_WD40
Beta-prop_SCAP
Beta-prop_Vps41
Beta-prop_IFT140_1st
PQQ_2
Motif
Other DBs
NCBI-GeneID:
8353398
NCBI-ProteinID:
XP_018652877
LinkDB
All DBs
Position
6:922592..935459
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AA seq
561 aa
AA seq
DB search
MDGIVTYESSSSDDEISKQDTAPTQLLKSSLIKSIDVAPVVEHKDEFLSIVPVDPQSHEL
IHNPTYEELFAPSFGPVNPFKSEKQLAPKNTLTGHVEEAHVNKFAFENQHRTFMTYGYAE
DPSVEGGADRRLVGEPESMMENEGKTACEKRQKLKGDLRKRDSNWDPTSEDYTGPWAKYK
DEVTVSVPSEEDRVYLEAYLAKKASKRKVVEEAPVEEKSTLHIPTPYDYQGRNFLHAPHD
IPNVNLRATDPPERCFLPKRQIHEWISAHARGVAAIRLFPKTGHLMLSAGMDSKVKLWEL
YKERRLIRSYMGHRQAVRDVSFNSDGTAFLSASYDRYVKLWDTESGKCTNQFNLKRVAYC
VQFNPDEDKQHLFLVGCADKKILCYDTRSGEVVQQYDRHLGAVNAVAFVDNNRRFVSTSD
DKSLRVWEWDIPVDFKYLADPSLHSMPAVSVSPNGKYLICQSLDNQLVVFNIFAGFKRMR
KKIFRGHMVSGYACTVDMSPDMRYVISGDGDGYLCLWEWKTTRLLTKWKAHDGVCINCAW
LPHETSKVITAGWDGNIRLWD
NT seq
1686 nt
NT seq
+upstream
nt +downstream
nt
atggatggaatcgtcacttatgaatcctcctcctctgatgacgagatttccaaacaagac
actgctccaacacaacttttaaaaagtagtttaattaaatcaatcgatgttgcaccagtt
gtggagcacaaggatgagtttctatctattgtgcctgtagatccacaatctcatgaactt
attcataaccctacttatgaagaattgttcgcaccatctttcggtccagtcaatcctttt
aaatctgaaaaacaattagctcctaaaaatactttaactggacatgtcgaagaggctcac
gttaataagtttgcttttgaaaaccagcatagaacttttatgacttatggttacgcagaa
gatccttctgttgagggaggtgctgatcgacgcttagttggagagccagaaagtatgatg
gaaaatgaaggaaaaactgcctgtgaaaagcgccagaaacttaaaggtgatctgcgtaaa
cgtgatagtaattgggatccaacaagtgaagattatactggaccatgggctaaatataaa
gatgaagtaactgtttcggttccttctgaagaggatcgtgtttatttggaagcatattta
gcaaagaaagccagcaagagaaaagttgttgaagaagctccagttgaagaaaaatctaca
ctgcatataccaacaccatatgattatcagggtagaaatttcttacatgcaccacatgat
ataccgaatgtgaatttacgagcaactgatccaccagaacgatgcttcttacctaaaaga
caaattcatgaatggattagtgcacatgcacgtggtgttgcagcaattcgcctctttcct
aaaactggtcatttaatgttatctgctggaatggattcaaaggttaagctttgggaatta
tataaagaacgtcgattaattcgtagttatatgggtcatcgtcaagctgttcgtgatgta
tcatttaatagtgatggtacagcatttttaagtgcatcttatgatcgttatgttaaatta
tgggatacagaaagtggtaaatgtacaaatcaattcaatttaaaacgtgttgcttattgt
gtacaatttaatccagatgaagataaacaacatttatttttggttggttgtgctgataag
aaaatattatgttatgatacacgtagtggtgaagttgtccaacaatatgatcgtcatttg
ggcgctgtcaatgctgttgcatttgtggataataatagaagatttgtttcgacatctgat
gataaatcgttacgtgtatgggaatgggatattccagtagattttaaataccttgctgat
ccttctttacattcaatgccagcggttagtgtttcaccgaatggtaaatatttgatttgt
caatcacttgataatcaattagttgtattcaatatatttgctggttttaaacgtatgaga
aaaaaaatttttcgtggtcatatggtatcaggttatgcatgtactgtagatatgtcacca
gatatgcgttatgttatctctggtgatggtgatggttatttatgtttatgggaatggaaa
acaactagattattaacaaaatggaaagcacatgatggtgtctgtattaattgtgcatgg
ttaccacatgaaacatcaaaagtaattaccgctggttgggatggaaatatacgtctatgg
gattaa
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