Schistosoma mansoni: Smp_079730
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Entry
Smp_079730 CDS
T01095
Name
(RefSeq) putative rna recognition motif containing protein
KO
K14407
cleavage stimulation factor subunit 2
Organism
smm
Schistosoma mansoni
Pathway
smm03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
smm00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
Smp_079730
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smm03019
]
Smp_079730
Messenger RNA biogenesis [BR:
smm03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
Smp_079730
U7-dependent histone pre-mRNA processing factors
Smp_079730
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
CSTF2_hinge
RRM_1
CSTF_C
RRM_occluded
RRM_7
Hist_deacetyl
Motif
Other DBs
NCBI-GeneID:
8345680
NCBI-ProteinID:
XP_018651234
UniProt:
G4VFB6
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All DBs
Position
3:17128646..17139375
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AA seq
412 aa
AA seq
DB search
MAAPVLTKEAAEKTARSIFVGNIPYEATEEKLIELFSKAGPVIGFRLVYDRESGKPKGYG
FCEYNNPAIAASALRNLQNIEFNGRPLRIGPAAGEQNSAELALSNPSVGPPLESPYGDNI
DPQAAPEAISRAVASLPPEQMYELMKQMKLCIQNNPNEARNMLLQNPQLAYALLQAQIVM
KIVDPKVAIAMLNRSHDQIPPAMPDEDTSMRAPVMAFPGHINQTTHVGPNAPGNHMMPIS
SPGSHLPPSGFPHHGGPGPVPHPNHFSVEQVPQRSQAPQGMQQKFYPNNMPPNGFPPNSV
APQSQPPYDYPSGQTQPPTMSGQQPHFNPNGPPNMAVRPQRPPAAQITPAIAAAAAASMG
PNSLLAGQGEQEKVTLIMQVLQLSDEQLALLPEDQRRSIMILKEQLGKTGAI
NT seq
1239 nt
NT seq
+upstream
nt +downstream
nt
atggcggcacccgtgttaactaaggaggctgctgaaaagaccgcgcgatctatcttcgta
ggcaacataccgtatgaagcgactgaggaaaagcttatcgaactatttagcaaggctggt
cctgtaatcggtttccgtttggtatatgatagagaatctgggaaacccaaaggctatgga
ttttgtgaatacaacaacccagctattgctgcgagtgctttgcggaatcttcaaaatatt
gaattcaatggccgtcctctgcgtatcggaccagctgctggggaacaaaattctgctgaa
ctggctttaagtaacccatctgtaggcccgccacttgaaagcccatatggagataatatt
gatccacaagctgcaccagaagctattagtcgagcagttgctagcttaccacctgaacaa
atgtatgaactaatgaagcagatgaaactttgtatacaaaacaatcctaatgaagcacgt
aatatgttactccaaaatcctcaactagcatatgctttactgcaggctcaaatcgttatg
aagattgtcgatcccaaagtggctatcgctatgctaaatcgcagtcatgaccaaatcccc
cctgctatgccggatgaagacacgtctatgcgagcaccggttatggctttccctggtcat
atcaatcagacaacacatgtgggtcctaatgctccaggtaatcatatgatgcctatatct
tcacctgggtctcacttgcccccctccggctttccacatcacggtggacctggacccgtt
ccacatccaaaccatttcagtgttgaacaagttccacaaagaagtcaagcacctcaagga
atgcaacagaagttttatccaaataatatgccacctaatgggtttcctcctaattctgtt
gctccacaatcccagccgccttatgactatccgtcaggtcagacacagccacctactatg
tcaggacaacaaccacatttcaatcccaatggacctccaaatatggctgtccgacctcaa
agaccacccgccgctcagattacccctgcaattgctgcagcggcagctgccagtatgggt
cctaatagtttactagcagggcaaggtgaacaagaaaaggtcacacttattatgcaggtt
cttcagctatcagatgaacaacttgctctcttgccagaggatcaacgacgcagcattatg
attttaaaagaacaacttggcaaaacaggagcaatttaa
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