Schistosoma mansoni: Smp_087270
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Entry
Smp_087270 CDS
T01095
Name
(RefSeq) putative atp-dependent RNA helicase
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
smm
Schistosoma mansoni
Pathway
smm03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
smm00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
Smp_087270
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
smm03041
]
Smp_087270
03009 Ribosome biogenesis [BR:
smm03009
]
Smp_087270
Enzymes [BR:
smm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
Smp_087270
Spliceosome [BR:
smm03041
]
Complex A
U2 snRNP components
U2 related factors
Smp_087270
Complex B
Smp_087270
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
Smp_087270
Ribosome biogenesis [BR:
smm03009
]
Eukaryotic type
90S particles
Helicases
Smp_087270
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
WHD_HA2
Helicase_C
DEAD
AAA_22
AAA_19
nSTAND3
AAA_25
Cas3-like_C_2
ABC_tran
AAA_23
SRP54
nSTAND_NTPase5
NACHT
nSTAND_NTPase7
AAA_29
Motif
Other DBs
NCBI-GeneID:
8355367
NCBI-ProteinID:
XP_018652166
UniProt:
G4VJG1
LinkDB
All DBs
Position
4:<19218257..19237766
Genome browser
AA seq
747 aa
AA seq
DB search
MSSRHRIDIGESKPRRSRFSDGPGNHSRDRSRSPDNQVKPKQNASNKSPFAAQTNPYNGK
SFSAKYFELLRKRIKLPVWEYKENFFQTLSENQVTVLVGETGSGKTTQIPQWCLEWVTGR
YPTKKAVACTQPRRVAAMSVAQRVSEEMDVELGQEVGYSIRFEDCTSSRTVMKYMTDGML
LREGMSDPLLEAYGVILLDEAHERTLATDILMGLLKEITKQRLDLKIVVMSATLDAGKFQ
DYFHKAPLMTVPGRTHPVEIFYTPEPERDYLEAAIRTVIQIHMCEEIEGDILLFLTGQEE
IEEACKRIQREVDGLGPDVGELRCIPLYSTLPPNLQQRIFESPPPKRANGAVGRKVVVST
NIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVTAISKASAQQRAGRAGRTRPGKC
FRLYTEKAYTNEMQENTYPEILRSNLGTVVLQLKKLGIDDLVHFDFMDPPAPETLMRALE
LLNYLAALDDDGNLTDLGSMMAEFPLDPQLAKMVIASCDYNCSNEILSITSMLSVPQCFV
RPADSKKTADEAKMRFAHIDGDHLTMLNVYHAFKQNHEDPQWCYDNFINFRSLKSADNVR
VQLSRIMDRFSLRRSSTDFTSRDYYINIRKALVSGFFMQVAHLERTGHYLTVKDNQVVQL
HPSTVMDHKPEWVLYNEFVLTTKNYIRTVTEVKPDWLVRIAPQYYDMSNFPDCDARRILE
RIVHRIQNRKLQQEQKQNQEPKLQAQT
NT seq
2244 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtcaaggcatagaattgatatcggtgaatctaagcccagacggtcaaggttttct
gatggaccaggtaatcactcacgtgatcgctcgcgctccccagataatcaggtcaaacct
aaacagaatgcttcaaataagtctccattcgcagcacaaacaaatccttacaacggcaaa
tcgtttagtgccaaatacttcgaacttctcaggaagcgtatcaaattgcctgtttgggaa
tacaaagagaatttttttcaaacattatcggagaaccaagtcaccgttttagttggtgag
acaggttctggaaaaacgacccaaattcctcaatggtgcctggaatgggtaactggacgg
tatccgaccaaaaaggcagtggcttgcactcagcctagacgggtagcagctatgtctgtt
gctcagcgtgtttccgaggaaatggatgttgaacttggtcaagaagtgggatacagtatt
cgattcgaggattgcacgtcctcaaggaccgtgatgaaatacatgactgatggtatgctt
ttacgtgaaggcatgtctgatcctttgctcgaggcatacggtgttattcttttggacgaa
gcccacgaaagaaccttggctactgatattttaatgggtctacttaaagaaatcacaaag
caaagattagatttaaaaatagttgtcatgagtgcgactttggacgctggaaaatttcaa
gattactttcacaaagcacctcttatgaccgtgcccggtagaactcatccagtggagata
ttttatactccagagccagaacgtgattatctcgaagcggctatccgtactgtaatccag
attcatatgtgcgaagagatcgagggtgacatattactgtttctgacgggacaagaggag
attgaagaagcatgcaaacgtatccagagagaagtagatggtttgggcccggacgttggt
gaactccgttgcattcctctctactctacccttccaccaaatcttcaacaaagaattttt
gaatctcctcctccaaaacgtgcaaatggggctgtcggtcgaaaggttgtggtgtccaca
aatattgcagagacatccctcacaattgatggagtggtttttgttattgacccaggtttc
gcaaagcaaaaagtctacaatcctcgtattcgtgttgaatctctcttagtcactgctatc
agcaaggcttctgcacaacaacgtgccggaagggccgggcgtacaagacctggaaaatgt
tttagattgtatacagaaaaggcatatacaaatgagatgcaagagaacacatatccagaa
attcttcgatcaaacctgggtactgttgtcctccagttgaaaaagctggggattgatgat
ttggtgcattttgactttatggatcctcccgctccggaaactctgatgcgtgctctagag
ttattgaattatttggcagcccttgatgatgatggtaacctaaccgatctaggaagtatg
atggctgagttcccacttgatccccaattagccaaaatggttattgcctcttgcgattac
aactgttcaaatgaaattctgagcatcacttcaatgttatcagtacctcaatgttttgta
cgccctgccgactccaagaaaaccgcagacgaagccaaaatgcgtttcgctcacattgat
ggtgaccacttaactatgttaaatgtatatcatgccttcaaacaaaatcatgaagatcca
cagtggtgttacgataatttcataaattttcgctcattaaaatctgccgacaacgttcgg
gtacaattatcgcgtattatggatcgattttctcttcgtcgttctagtacagacttcact
tctcgggattattacatcaacattcgaaaagctttagtatctggttttttcatgcaggtt
gctcatcttgaacgtactggacactatttaactgtaaaagacaatcaagtggtccagctt
cacccctctacagtaatggatcacaaaccggaatgggtgttatacaatgagttcgtcctt
acaacaaagaattatatacgtacagtgactgaagtaaaaccagattggcttgtgcgtatc
gctcctcaatattatgatatgtctaatttccctgattgtgatgctcgacggatacttgaa
cgaattgttcacaggattcaaaatcgtaaacttcaacaagagcaaaaacaaaaccaagag
ccgaaattacaagcacaaacttga
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