Schistosoma mansoni: Smp_088600
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Entry
Smp_088600 CDS
T01095
Name
(RefSeq) ccr4 not-related
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
smm
Schistosoma mansoni
Pathway
smm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
smm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Smp_088600
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smm03019
]
Smp_088600
Messenger RNA biogenesis [BR:
smm03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
Smp_088600
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
Smp_088600
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
DUF7619
Phage_int_SAM_6
Motif
Other DBs
NCBI-GeneID:
8342482
NCBI-ProteinID:
XP_018649603
UniProt:
G4VDJ1
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Position
2:complement(1218485..1230159)
Genome browser
AA seq
818 aa
AA seq
DB search
MADKRKLQSDIERNLKRVQEGRTAFQEILDKFESTNNPTQKEKFEGDLKKEIKKLQRLRD
QIKTWITASEVKDKRPLLEARKEIEQDMERFKVIEKETKTKAYSKEGLLSIEAKKDPLQK
EKEELDDWLKQCISSLNTQTEKYEFEIENLSNNTKKKRIDKETASAIDEKRQRLEMCCFH
VEKLETIMRLLDNERLDCTKVRSIQESIEYVIDCSDNQSMFDFKNIYDDLCLDELGDSTG
ITAASGTATGNQEHDLNGVITPGTTLVNQRVGSDDAGSSTSTHTSASNNTDSSVTHPGSS
ASSNASSSRERAKSDDKVSLLPHVSASSTSTPMKSSNTPGSSGKQKPAASINQTAPALMS
QVVAGTPNKSGKLNANNHSTSNSITIVAEMGPIKPSSTLDSQVVVDDLSRNQKNETNQKH
NDRPNTVTTNPQLQSQIKNGPGDDSNSLTPFSSVSGINSTSTVPSLAFSASHVKEDSSVI
NGREELHAPCQPSCVPNSINSSSPIPLRSMSSDVSKTSGVTNAYNNSMLSTSTDESPENV
NRTPPSLYSTAMLAASQDKQLSSLLACSQHPSLGRAGSNVAMDPSLSAISLSSKFHSTSS
VSSLPLPSTIISTTNPQVQSSYLGLDSQLSSIQPSLHSQQIKNQNSPVHAHMHPRDAAAP
FRNRNLDKPKGAVPQELLLQLQALESGYRRLPHSCDTEKSRMIICKNTINCPIYYPREPI
IGTDNEEYYMKLDAQTLFFIFYYFEGTKAQYYAAKALKRMSWRFHTKFMMWFQRHEEPKQ
ITDEYESGSYIYYDYRTMRQRKKEEFMFHYSFLEDKDF
NT seq
2457 nt
NT seq
+upstream
nt +downstream
nt
atggccgacaaaaggaaactgcaaagtgacattgaaaggaaccttaagagagtacaggag
ggaagaactgcctttcaggaaatactggataaatttgaaagtaccaataatccaactcaa
aaagaaaagtttgaaggcgatttaaaaaaagaaattaagaaacttcaaagattaagagat
caaatcaaaacatggattacagctagtgaagtaaaagataagcgaccattattagaagca
cgtaaagaaatcgaacaggatatggaacgattcaaagtaattgaaaaagagacaaaaacc
aaagcttattccaaagaaggtctattatcaattgaagcgaaaaaagatccattacagaaa
gaaaaagaagaattagatgattggttaaaacaatgtatcagttcattaaatacacaaaca
gaaaaatatgagtttgagattgaaaacttatcaaataatactaaaaagaaaagaatagat
aaagaaacagcttcagcaatcgatgaaaaacgtcaacgtttagaaatgtgttgttttcat
gttgaaaaacttgaaacaattatgcgtttattagataatgaacgattagattgtacaaaa
gttagatctattcaagagtctattgaatatgtgatcgattgtagtgataatcagtctatg
tttgactttaagaatatttatgatgatttatgtttggatgagttaggtgattctactgga
ataactgcagcatcaggcactgcaacaggaaatcaagagcatgatttaaatggtgtaata
acccctggtactaccttggtaaatcaacgggtagggagtgatgatgctggctcttcaact
tcaactcatacaagtgcatcaaataatacagattcgtctgtcactcatcctgggtcatca
gcgtcctccaatgcgtcttcttcccgagaacgtgctaaaagtgatgataaagtctccttg
ttaccacatgtatccgcttcttctactagtacacctatgaaatcttcaaatacaccaggt
tcatcgggtaaacaaaaacctgctgcttcaattaaccaaactgctcctgctcttatgtcc
caagttgttgctggcactcctaataagtctggaaagttaaacgcaaataatcattccaca
tcaaacagtataacaatcgttgccgagatgggcccgatcaaaccctctagtactctagat
tctcaggttgttgttgacgacctttctcgaaaccagaagaacgaaaccaatcagaaacat
aatgaccgtcccaatacagttacaacaaatcctcagttacaatcacaaataaaaaatggc
cccggtgatgatagcaattcattaacacctttctcctctgtttcaggaataaattcaaca
tctacagtacctagtcttgcattttctgcctctcatgtaaaagaagattcttctgtaatc
aacggtcgagaagaattacatgctccatgtcaaccgtcgtgtgttcccaactcaataaat
tcttcatcgcctattccactccgaagtatgtcatctgatgttagcaagacttcaggtgtt
actaatgcttacaacaattcgatgctttccacttctacagatgaaagccctgaaaacgtt
aatcgtactcctcccagtttatattcaacggctatgctagctgcttctcaggataaacaa
ctgtcatccctactcgcctgctctcaacatccatctttaggacgtgcaggttctaatgtt
gctatggatccgtcactttctgcaatttccttgtctagtaaatttcattcaacatctagt
gtttcatctttaccacttccttcaactatcatatctacaaccaatcctcaagtacagtcc
tcttatttaggactagacagccaactatccagtatacaaccatctttacattctcaacaa
ataaaaaatcagaatagtcctgttcatgctcatatgcatccacgtgatgctgctgctcct
ttccgtaacagaaatctagacaaacccaaaggagctgtaccacaagagcttctattacaa
cttcaagcattagaaagtggttatcgtcgtttaccccattcatgtgatacagaaaaatcc
cgtatgattatctgtaaaaatacgatcaattgtccaatatattatccacgtgaacctatt
attggtacagataatgaagaatattatatgaaattagatgctcaaacattattttttata
ttctattattttgaaggtactaaagcacaatattatgctgctaaagcattaaaacgtatg
tcatggagatttcataccaaatttatgatgtggtttcaacgacatgaagaaccaaaacaa
attaccgatgaatatgaatcaggttcttatatttattatgattatagaacaatgagacaa
cgtaaaaaagaagaatttatgtttcattatagttttttagaagataaagacttttaa
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