Schistosoma mansoni: Smp_121800
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Entry
Smp_121800 CDS
T01095
Name
(RefSeq) putative replication factor A 1, rfa1
KO
K07466
replication factor A1
Organism
smm
Schistosoma mansoni
Pathway
smm03030
DNA replication
smm03420
Nucleotide excision repair
smm03430
Mismatch repair
smm03440
Homologous recombination
smm03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
smm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Smp_121800
03420 Nucleotide excision repair
Smp_121800
03430 Mismatch repair
Smp_121800
03440 Homologous recombination
Smp_121800
03460 Fanconi anemia pathway
Smp_121800
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
smm03000
]
Smp_121800
03032 DNA replication proteins [BR:
smm03032
]
Smp_121800
03400 DNA repair and recombination proteins [BR:
smm03400
]
Smp_121800
Transcription factors [BR:
smm03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
Smp_121800
DNA replication proteins [BR:
smm03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
Smp_121800
DNA repair and recombination proteins [BR:
smm03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
Smp_121800
MMR (mismatch excision repair)
Smp_121800
DSBR (double strand breaks repair)
HR (homologous recombination)
Smp_121800
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
Motif
Other DBs
NCBI-GeneID:
8352029
NCBI-ProteinID:
XP_018650678
LinkDB
All DBs
Position
3:complement(420346..436451)
Genome browser
AA seq
560 aa
AA seq
DB search
MLATQLNHLIEENKLVNNTVIRVRKHVCNNIQNNKVVLIVLDLDILGTDDSSGGVKSEQP
PTVAKPATTTSHSYEPEQKTPPKSSTGPFSGGQPSTPGTPGCGLPRVFPIQSLNPYQNRW
TIRARVSQKSAIRTWSKQGRDGKLFNFTLVDESGEIRVTGFNAEVDKFYDMIEASNMFVN
KVYYVSRANLKAANKQFNTTNNDYEMTLHSDSQVLPCEDSDTSSLPETHFNFISIGKLDT
QSPGSFVDIVGVVHECGEVQSITAKASQRELRKRELGLVDSSNCLVRLTLWGEEAENFVG
ASHPVIVIKAAKISDFNGRSLSVSPTSSLLISPTNIPEAIRLKGWYEHEGRFSNFETFRS
EMVGSSGGADGVSSSSGVLGGWNLLQDVKASGVGANVKADYFTCKATVVFMKKENFMYQA
CSTEGCNKKVIDLGNGLYRCEKCARETPDCKWRLLLMAKIADITGDLWVTCFQDAAEVLL
GQTAEKLGTIKSTQDETQLEKVFIESAFNSWIFRLRAKVDRYNDEERLRVVVADVKPVDL
VDYSRRLLKAINDLSATLSI
NT seq
1683 nt
NT seq
+upstream
nt +downstream
nt
atgctcgctacacagttaaaccatttgattgaggaaaacaaactggtcaacaatactgta
atccgcgttaggaaacatgtttgtaataacatccaaaataataaagttgtccttattgtt
ttggatcttgatatccttggaacggatgattcgtcgggtggtgtgaagtccgaacaacca
ccaaccgtggccaaaccagccacaactacatctcattcatatgaacctgaacagaaaact
ccacccaaatcttctactggtcctttctctggtggtcagccaagtactcctggaacacca
ggttgtgggctcccacgtgtatttcccatacaaagcctcaatccgtatcagaatagatgg
actatacgtgctcgtgtatcacaaaagtctgctatccgaacttggagcaaacaaggtcgt
gatggaaagttattcaactttacgctagttgatgaaagcggtgaaattcgtgtaactgga
ttcaacgctgaagtggataaattttatgatatgattgaggcaagtaacatgtttgtcaat
aaagtgtactatgtcagtcgagcgaacttgaaagccgctaacaaacaattcaatacaact
aataatgattacgaaatgacacttcatagcgatagtcaagttttgccttgtgaagattct
gatactagttctttgccagaaactcacttcaattttatttcaataggaaagttagataca
cagtctcctggatcttttgtcgatattgttggagttgttcatgaatgcggtgaagtacaa
tcaattactgctaaagcatctcaacgtgaactacgtaaacgtgaattaggattagtggat
agttctaactgtttagtacgtcttacactatggggcgaagaagcggaaaatttcgttggt
gcgagtcatcccgtcatagttataaaagcagcaaaaatatctgattttaatggtcgctct
ttatctgtaagcccaacatcatcccttctcattagtcctacaaatattcctgaagctata
cgactaaaaggttggtatgaacatgaaggtcgcttctctaactttgaaaccttccgtagt
gaaatggttggatcttcaggaggagcagatggtgtatctagttcatctggtgttcttggc
ggttggaatcttttacaagatgttaaagcatctggtgtaggagctaatgtaaaagcagat
tatttcacttgtaaagccactgttgtattcatgaaaaaggagaatttcatgtatcaagct
tgttctactgaagggtgcaataaaaaggttattgatttaggaaatgggttatatcgatgt
gaaaaatgtgctcgggaaacacctgattgtaaatggcgcttgcttcttatggccaaaatc
gctgacatcactggagatttatgggttacatgtttccaagatgctgctgaagttttactg
ggacagacagctgaaaagttaggcactataaaatcaacacaagatgaaacgcagttggaa
aaagttttcatcgagtcagcattcaactcatggatatttcgtttacgagctaaagttgat
cgttataatgatgaagaacgtttacgtgttgttgttgcagatgttaaaccagtagatttg
gttgattattctaggcgtttattgaaagccataaacgatctatcagcaactttatctatt
tag
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integrated database retrieval system
