Schistosoma mansoni: Smp_123510
Help
Entry
Smp_123510 CDS
T01095
Name
(RefSeq) putative vacuolar protein sorting vps16
KO
K20180
vacuolar protein sorting-associated protein 16
Organism
smm
Schistosoma mansoni
Pathway
smm04140
Autophagy - animal
smm04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
smm00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
Smp_123510
04148 Efferocytosis
Smp_123510
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
smm04131
]
Smp_123510
Membrane trafficking [BR:
smm04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
Smp_123510
Hops complex
Smp_123510
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps16_N
Vps16_C
Spatacsin_C
Motif
Other DBs
NCBI-GeneID:
8342442
NCBI-ProteinID:
XP_018651170
LinkDB
All DBs
Position
3:complement(15128105..15143610)
Genome browser
AA seq
934 aa
AA seq
DB search
MTVLGEDWFAIGDIYFRKLHLYDMPWGVGFSISQFKTSICQYSGYIAMYLDGQAGAKPIL
QIYTSSGKLVSQSVWKDAPGILLGWTLSEDLLVIQKTGFTTILDHQGKFVRRFSMGPEAE
EREIICAKLFTIDYNTGIAILTGGNHIYITTSIETPRMRRLVELPGPVKSLSHWTIVTTP
LETGTPDSFRSPWVMFSNNKNLYRADFGTVEGIDLSKLTRSAGSDICLLSISLNMQFVAI
YLTNGELLITNTRFTELHSHIDLTQRISVMLMNNNSNSANQKLNHPKTMLWLTNSAVVLQ
WNNLIAIISAQSDIYETFYADDICLAQEIDGIRILSPTSHELLQRVPSPLESLGRIGASC
PATWLLSASKSLKINCGRTNDYLLPIKQPNEMIDAISHCIEAACHATVDPICQQELLESA
HLDHYSVEAKLKELADHAAKVCQTLRLLNSLAVPWLGIALTWRQFRELGPNKLFERLLSR
CHYPMAIELVRIHQKHKWPISILEESQSNYGTCTFTRLLAHWACNSSITSSEAATLISER
VAAIVDKLFNNSSESKSKSSNHHANYYSTSIPHLDFADVASQAISAGRETVAEQILEYEP
RAWRQVPLLLKLSRYNRALVRAVETGNPELITTVVVALQEQSKLPPADLAMVLRRHPIAL
AIYQETLEQADHSKSGSENSTKSALLNFDHENDRASEAKKIVLSAYQENSLVSRLTLLQN
AEEIYRQSKNDFMAQQCNAQIRLLKFQSKLEKQEISAPVFEIKSIPGSNRILPEVIQSSS
INEKLWVGQSLNTTLSRLLASGQSERQADQLRREFRVSEKRFAFLRVVGMAINNASWSEM
DKMIRAKKPPVNVEILIKICIDGNRIDEAVKLISKLPPERTVRFWVMAGRIEEAIQVAVR
EKSEYDLLYIQREVGKTNKELYDRIISLRAQIQR
NT seq
2805 nt
NT seq
+upstream
nt +downstream
nt
atgacagtcttgggtgaggactggtttgctatcggagacatttatttcagaaagcttcat
ctttacgatatgccatggggtgtgggattttcaatatcacaattcaagacatccatttgt
cagtattctggttatatcgcaatgtatttggatggccaagcaggagcaaaacctatactt
caaatatatacatcatcaggaaaactcgtttcccaaagtgtttggaaagatgcacctggt
atattgcttggttggactttgtcagaggatttgttagttattcaaaaaacgggattcacc
acaatattagatcatcagggcaagtttgttcgacgtttcagtatgggacccgaagctgaa
gaaagagaaataatttgtgctaagctttttaccattgattataatacaggaatagctatt
cttaccggtggaaaccacatatatataacgactagtatcgagactcctcgtatgcgacgc
cttgtagaattacctggaccagtaaagtctttatcacattggactattgtcacaacacct
cttgaaactggaacacctgattcttttcggagcccatgggtgatgttttcaaacaacaag
aatttgtaccgagctgactttggaacagttgaaggtattgatttgtcaaagcttactagg
tcagctggctctgatatttgcctattgtcaatatctttgaatatgcaatttgttgcaatt
tatttaaccaatggtgaattgttaattaccaatacacgattcactgaattacattcacat
attgacttgacccaacgtatatcagttatgttgatgaataataatagtaattcagccaat
caaaaattaaatcaccctaaaacgatgctttggttaactaattcagctgttgtacttcaa
tggaataatttaattgctattatcagtgcacagtccgatatttatgaaacattttatgct
gatgatatatgtttagcacaagagattgatggaattcgcattctatcacctacatcacat
gaattattacaacgtgtaccatccccattagaatcacttggacgtattggagcatcgtgt
ccagccacatggttattgtctgcaagcaagagtttaaaaatcaattgtggacgtactaat
gattatttattgcctattaaacaacctaatgaaatgattgatgcaatatcgcattgtatt
gaagcagcatgtcatgcaactgttgatcctatttgtcaacaagaactactggaatctgct
catttagatcattattcagtcgaggctaaattaaaagaacttgcggatcatgctgcaaag
gtttgtcaaactttacgtttgttaaatagcttagctgttccatggttaggtattgcgtta
acatggcgtcagtttcgtgaattaggaccgaacaaattgtttgaacgtttattgagtcgc
tgtcattatccaatggcgattgaacttgttcgaatccatcaaaaacataaatggccaata
agcattctagaagaaagtcaaagcaattatgggacatgcacatttactcgtttacttgct
cattgggcatgcaatagttctataacatcttcagaagcagctacattgatctcagaacgg
gtagcagctattgtggataaattattcaacaattcatcagagagcaaatctaagtctagt
aatcatcatgctaactattacagtacctctattcctcatttggatttcgctgatgtagct
agtcaagctatttcggctggtcgagaaacagttgcggagcaaatattagagtatgagcca
cgcgcttggcgtcaggtaccattacttcttaaattatctcgttacaatcgtgcattagtt
cgagcggtagagactggaaatcctgaactaattactacggtcgtggtagcattgcaagag
caaagtaaattaccaccggcagatcttgcaatggtacttcgtcggcatccaatagctctg
gccatatatcaagagacactggaacaagctgaccattctaaatctggttctgaaaattca
acaaaatctgctcttttaaattttgatcatgaaaatgatcgtgcttcagaagctaaaaaa
attgttctatcagcctatcaagaaaatagcttggtttcacgattgacattactacaaaat
gctgaagagatttatcgtcaatcaaagaatgacttcatggctcagcaatgtaacgctcaa
atccgcctattgaaatttcaaagtaaacttgagaaacaagaaatatctgctcctgtcttc
gaaattaaatccatacccggctctaatcgtatattaccggaggtaatacagtctagtagt
ataaatgagaagctttgggttggtcaatcgttaaacacaacactcagtcgtttattagct
tccgggcaatccgaacgtcaagcagatcaattacgcagggaattcagagtttcagaaaaa
cgtttcgcttttcttcgtgttgttggtatggctatcaacaatgcatcttggtcagaaatg
gataaaatgattcgagcaaaaaaaccaccggttaatgttgagatattaatcaaaatctgt
atcgacggcaatcgtatagatgaagcggtaaaactaatttctaaacttccacctgaacga
acagtccgtttctgggtaatggctggtagaatcgaagaagccattcaagtagctgttcgt
gagaaatcagaatatgatttgttgtatattcagcgtgaagttggaaaaaccaacaaagaa
ttgtatgatcggattattagtctacgagcacaaatccagcggtga
DBGET
integrated database retrieval system
