Schistosoma mansoni: Smp_123830
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Entry
Smp_123830 CDS
T01095
Name
(RefSeq) putative collagen alpha-1(V) chain precursor
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
smm
Schistosoma mansoni
Pathway
smm04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
smm00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
Smp_123830
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
smm00536
]
Smp_123830
Glycosaminoglycan binding proteins [BR:
smm00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
Smp_123830
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_2
Laminin_G_3
Laminin_G_1
Motif
Other DBs
NCBI-GeneID:
8348336
NCBI-ProteinID:
XP_018647704
LinkDB
All DBs
Position
1:complement(8869986..8918490)
Genome browser
AA seq
1605 aa
AA seq
DB search
MIFKQYNRRDDQLNTVPFRSILILLSLLIINSQQFNAQNITEEGNQNIKTIIEYKKNEDQ
FKDIIDLLQIVEIDKLDNYEVTRQYGFCPSSLIENPNTAYSYHRGDKLKLPAEKAFPATF
PQDFSILTTVRLKHEQIQKIFDVIDENGESQLAMSVGNNIALHYYLSGDSSSIVEFLNVK
LNDLRWHRIALSIKGDSVTLIIDCKVITSKLLNRSLTENLKFGKGMLYILQDKTGSASFS
GAIEQLLIIPTPSGAYDQCTVYSPCSETDKTGDEMQLQEPGRDGRNGIPGAPGLPGVPSH
ILMMPLPSFGKNELSRMASFRTTVQQAVMMLKGSRGQQGMIGLPGIQGPPGPRGSKGDQG
LFGEPGFIGPTGLRGPPGPIGPRGRPGVDGEIGASGLAGPKGLPGLPGLPGLPGHRGHKG
EIGPNGIKGDVGLRGVPGPYGRDGEVGPPGEPGSVGLQGPMGPVGPAGLRGLPGRIGPNG
LKGELGDSGEMGPPGPQGPVGPPGVPGPQGIRGLTGKPGARGPPGVTGLPGSPGMTGNPG
PQGNAGPKGEPGLTGEPGDTGPVGASGYKGDRGPRGLPGAKGTQGAAGLTGVRGDRGEKG
SKGERGLPGPRGSEGPVGIKGEPGIIGELGPRGLEGQKGNEGPRGSAGYPGAPGPKGSIG
PAGGIGSPGEKGDPGHMGPLGLSGPVGPRGAPGPRGAPGQSGPVGFKGDEGPTGPTGPPG
AAGPQGPRGSPGFVGVPGPPGLPGRPGPAGLLGDRGEPGEPGIPGEIGPIGMVGVPGQIG
EQGAPGERGPPGPRGPQGIPGKPGVEGIEGVQGEKGTKGAAGPPGPSGPVGLRGTRGPPG
PSGDPGSKGDEGRAGPQGSLGDKGDRGPPGPHGPPGPIGPVGPQGLPGSQGEPGDKGARG
PPGPIGETGEKGVQGLIGKPGLRGPTGADGEQGDQGSPGQQGTKGDRGEAGEQGSAGQQG
AAGSPGPQGMVGEPGEIGIAGVAGIKGIEGKVGPPGAPGPAGVQGSPGRSGPRGEPGIKG
VIGAEGPPGFPGPVGLAGAPGKMGIPGVPGPPGLPGLKGEQGKPGARGEQGAQGTTGPPG
PKGMKGMLGRPGRQGQPGSAGPPGIVGEPGVQGAQGPMGPVGAPGLPGEPGAAGPPGKDG
VRGPIGLEGLFGDDGPPGPPGPVGVPGVQGPPGTAGETGPTGDPGDRGAAGPMGSPGERG
PPGITGAEGQVGPQGPEGEQGLQGPPGESGPKGNLGKTGSPGPIGPKGESGPKGVGGNPG
TVGPPGPKGEQGSIGDPGPTGKQGEMGDHGDQGPPGPRGPNGDEGESGPPGPTGPPGPPG
LQGPRGEQGHQGDPGPMGKQGPQGQVKITNNGENLRMRYKRSAAIQTEETLEQINQNIFG
RVDALNKKVRSRRYATGLSPQNPARTCKDVRLTNKFAQNDTYWVDPNEGSNKDAIRAKCT
FFDDGTVETCVDSSMDQLHNYGSHSQVNMLRIQHRYASQELEFLCDGTEIYGSWNSRTSQ
SDFNKATALLAHNERMLDLTSGERLGPGKYHMDKRNYRNNLDRVDTSIIVEYDGCQYLTK
GAATKLLIETRDLEVLPIIDFKVRNFDKQGTCSLSVNVGAVCYRT
NT seq
4818 nt
NT seq
+upstream
nt +downstream
nt
atgatctttaaacaatataatagaagagatgatcaattaaataccgtcccatttagatca
atattgatattattatcattattgattattaatagtcaacaattcaatgcacaaaatatt
actgaagaaggtaatcaaaatataaaaacaataattgaatataaaaagaatgaagatcaa
tttaaagatattatcgatttattacaaattgttgaaattgataaattggataattatgaa
gttacacgtcaatatggattttgtccatcatcattaatagaaaatccaaatactgcttat
tcatatcatcgaggagataaactgaagttaccagcagagaaagcattcccagctacattt
cctcaggatttttctattcttactactgtacgattgaagcatgaacaaattcaaaagata
tttgatgtaatagatgaaaatggggaaagtcaattggctatgtcagttggaaataatata
gctttgcattattatttatctggggattcatcgtctatagtggaattcctaaatgtcaaa
ctgaatgatctaagatggcatagaattgcattaagtattaaaggggattcagtcacatta
attattgactgtaaagttattacatcaaaattgttaaatcgttcattaactgaaaacttg
aaatttggtaaaggaatgctttatattctacaagataagacaggatcagccagtttttct
ggtgcaatagaacaactgctgattattccaacacctagtggagcatacgatcaatgtact
gtttattctccatgtagtgaaacggacaaaactggtgatgagatgcaacttcaagaaccg
ggacgagatggtcgcaatggaatcccaggagcccctggtttacctggtgtaccgagtcac
atattaatgatgccattaccaagttttggaaagaatgaattaagtcgtatggccagtttt
agaacaacagtacaacaagctgtcatgatgctaaaaggaagtcgaggtcagcaaggtatg
attggtctcccaggaatacaaggtccacctggaccaagaggttcgaaaggagatcaaggt
cttttcggagaacctggttttataggtccaacaggtttaagaggtcctccaggtcctata
ggtcctcgtggtagaccaggtgttgacggtgagataggagcaagtgggttagctggtccc
aaaggattacctggtcttcctggattaccgggtttacctggtcatagaggtcataaagga
gaaattggaccgaatggtattaaaggagatgttggacttagaggtgtgcctggtccttat
ggacgagacggtgaagtaggtcctcctggagagcctggatcagttggacttcagggccct
atgggaccagttggaccagctggattacgaggattacctggaaggattggaccaaatgga
ctcaaaggtgagttaggagactcaggtgaaatgggcccacctggtccacaaggtcctgtt
ggtccaccaggggtacctggacctcaaggcatacgtggactaactggaaagcctggagca
agaggaccacctggtgtaaccggactaccaggtagccctggaatgactggaaatcctgga
ccacaggggaatgcaggtccgaaaggagaaccaggattaactggagaacctggagatact
ggtcctgttggagcctcaggatataaaggtgaccgtggacctcgtggtttacctggagct
aaaggaactcaaggagcagctggtttaactggtgttcgtggagatagaggtgaaaaaggt
tcaaaaggtgaacgtggtctgcctggaccacgaggtagtgagggtcctgttggaataaaa
ggtgaacctggcataataggtgaacttggtcctcgtggattagaaggtcagaaagggaat
gaaggtcctcggggaagcgcaggatatcctggggccccaggtcctaaaggttccattgga
ccggcaggtggtattggaagtccaggtgaaaaaggcgacccaggtcatatgggaccatta
ggtttgagcggacctgttggaccacgtggagcacctggtccacgtggggcgccaggccag
tcaggaccagttggattcaaaggtgacgagggaccgacaggaccaactggtcctcctgga
gctgctgggcctcaaggtccaaggggttcacccggattcgtgggagttccgggtcctcca
ggtttacccggtcgaccaggaccagctggacttttaggagatcgaggtgaacctggtgaa
cctggtatacctggtgaaattgggccaataggtatggttggtgtacctggtcaaatcgga
gaacaaggggcaccaggtgaacgtggtcctccaggaccacgtggacctcaagggatccca
ggtaaacctggggtagaggggattgaaggagtacagggtgaaaaaggaaccaagggtgct
gctggtccacctggtcctagcggaccagttggattacgaggaacgcgtggaccaccaggt
ccatcgggcgaccccgggtcgaaaggagatgaaggtcgcgccggcccgcaaggaagcctc
ggtgataaaggtgacaggggcccacctgggccacatggaccacctggccccataggacca
gtcggaccacaaggattgccaggaagtcaaggtgaacctggtgacaaaggtgcacgtggt
cctcctggcccaatcggtgaaacaggtgaaaaaggtgtgcagggattaattggcaagcca
ggcttacgtggaccaacaggagccgatggagaacaaggcgaccaagggagtccgggacaa
caaggtactaagggagacagaggcgaagcgggtgaacaaggttctgccggacagcaagga
gcagctggatctccaggtcctcaaggtatggttggggaacctggagagataggaatagct
ggagttgcagggataaaaggtatagaaggcaaagttgggccaccgggggcacctggaccg
gctggtgtacagggctcacctggtcgaagtggtccacgtggggaaccaggtattaaagga
gtgatcggtgcagaaggcccacctggatttcctggacccgttggtttggctggggctcca
ggaaaaatgggaatacctggagtacctggtcctccaggattacctggattaaaaggagaa
caaggaaagccaggtgcacgtggtgaacagggggctcaaggtactactggaccacctgga
ccaaaagggatgaaaggaatgctcgggagacctggacgacaaggtcaacctggatctgcg
ggaccaccaggaatagttggagagccaggtgttcagggtgcacaagggccaatgggtcca
gttggtgctccaggattgccaggcgagccaggcgcagcaggtccgccgggaaaagatgga
gttagaggacctatcggtttagaaggactatttggtgatgatgggcccccaggaccacct
ggacctgtgggcgttcctggtgttcaaggtcctcctggaacagctggtgagactggtcct
accggagacccaggagatcgaggtgctgctggaccaatgggatctcctggtgaacgtgga
ccgcccgggatcacgggagctgaaggacaagtcggtcctcaggggcctgaaggagagcag
ggtcttcaagggccaccaggagaatctggaccgaaagggaatttaggtaaaacgggttca
ccaggtccaattggtccaaagggagagtctggtccaaaaggagtaggtggtaatcccgga
acggttggaccaccgggacctaaaggagagcaaggtagtataggagaccctggaccaact
ggaaaacaaggtgaaatgggtgatcatggggatcagggacctcctggtcctcgagggccc
aatggtgatgaaggagaatctggacctccaggtccaacaggccctcctggcccacctggt
ctacaaggtcctcgaggagaacaaggtcatcaaggtgatcctggaccaatgggtaaacaa
ggcccacaaggtcaagtgaaaataacaaataatggagaaaatctacgaatgagatataag
agatcagctgcaatacaaactgaagaaacacttgaacaaattaatcaaaatatatttgga
cgtgtagatgcactgaataagaaagtacgttcaagacgttatgcaactggtttaagtccc
caaaatccagcacggacatgtaaagatgttagattaacaaataaatttgctcagaatgat
acttattgggtcgatccaaatgaaggatcaaataaagatgcaattagagcgaagtgtaca
ttttttgatgatggcactgttgagacatgtgttgattcaagcatggatcaattacataat
tatggaagtcattcacaagttaatatgttacgtattcaacatagatatgcatcacaagaa
cttgaatttttatgtgatggaacagaaatctatggttcatggaattcacgtacaagtcaa
tcagattttaataaagcaacagctctgctagcacataatgaacgaatgcttgatttaact
tcaggtgaaagattaggaccgggaaaatatcatatggataagcgtaattatcgaaataat
ttagatcgtgttgatacaagtattattgtagaatatgatggatgtcagtacttgacaaaa
ggtgcagccactaaattattgattgagacaagagatttagaagtattgccaattattgat
tttaaagtacgtaatttcgataaacaaggaacatgttcattaagtgtaaatgttggtgct
gtatgctatcgtacatag
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integrated database retrieval system
