Schistosoma mansoni: Smp_128420
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Entry
Smp_128420 CDS
T01095
Name
(RefSeq) hypothetical protein
KO
K14323
protein CASC3
Organism
smm
Schistosoma mansoni
Pathway
smm03013
Nucleocytoplasmic transport
smm03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
smm00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
Smp_128420
03015 mRNA surveillance pathway
Smp_128420
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smm03019
]
Smp_128420
Messenger RNA biogenesis [BR:
smm03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
Smp_128420
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Btz
Motif
Other DBs
NCBI-GeneID:
8355165
NCBI-ProteinID:
XP_018654518
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All DBs
Position
W:complement(23639413..23642644)
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AA seq
676 aa
AA seq
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MHTVHRHKSPSGLVLDDNFLSHASSSDSLSNENYENGHSDEENLPGARKRHDLRKVTDNS
DDVSEKGLSSAHSCSDFNSYWSENEEDHDISNSYDSAVNSVLDGVAGLNVNEKENDSLPQ
EGTDAVDIDLDVDADQDKTNPAYIPRGGRYYMHDHRTLEKDVVVVKKQESSRRWQHDKFN
YYDQAPRSTEEIIWRYGYDIRKENICPSDNRSESNNRSNVPMTTSIPVETNKTYHSSHQP
SQVTGTKVRSSVLCGNESQKSSTGTQGKSITYSSIRYSGYGRFSKSDCHERNFSTRKDSV
TDEFQTQVSSRLIKEDYVSGPNVRRSHPTQTLDTKPVYPTSTYDSHHKHQQGSNHSYYTS
SFNLPRRNRGDSSNHPVSNHQYVHKKQVINVAPVNTKSSRVYKPRVIKHSSHIREQVRRG
ERVPKRYSAVRQNVSNIDSSTDKKTLRLPSPVRTKESCGSIDVKDVAVTKLSIPENVHEV
TQLHESAADCRDVTATQDQVCTKITGISTFNQQKADSQRVSLGVHPVSVTHFQPSIEYST
RIPAEYSSINPHLQTIYCSDIFQHDPRYQPQSTVMSNCVLPSAQQAQMHGLCGNMIQNVN
LPVPVATTLCFDPVPCGVTNDPSQTYVMHLGITAMEPHWNSEKKPVFNLRFPKKPLEVID
PRDGTRVNKVALSETQ
NT seq
2031 nt
NT seq
+upstream
nt +downstream
nt
atgcatacagtgcatcgacataaaagtccgtcggggttggttttggacgataattttcta
agccacgcttcgtcatccgatagtctaagtaatgaaaactatgaaaacggacattcagac
gaagaaaatcttcctggtgctcgcaaacgtcatgatctccgtaaagttactgataattca
gatgatgtctcagaaaagggtttgagttcggcacactcatgtagtgatttcaatagttat
tggagtgaaaacgaggaagaccacgatatcagtaatagctacgattctgctgtgaatagt
gtgctagacggtgtagccggacttaacgttaatgaaaaggaaaatgattcattaccacag
gaaggtactgatgctgtagatatagatctcgacgttgatgctgatcaggacaaaaccaat
ccagcgtacatacctcgaggtgggaggtactatatgcatgatcatcgtacactagaaaaa
gacgttgtggtggttaaaaagcaagaaagtagtcgacgatggcagcatgacaagtttaat
tattatgatcaagccccaagatctacagaggaaatcatatggaggtatgggtacgatatt
cgtaaagaaaacatatgcccatctgacaacaggtctgaatctaataatcgaagtaacgtc
cctatgacaacctccattcccgtcgagactaataagacataccattcttcacatcaaccg
agtcaagtaaccggtactaaagtgcgaagcagtgtgttatgcggtaacgaaagccaaaaa
agttctactggaacccaaggaaaaagcatcacatactccagcattaggtacagtggttat
ggtcgcttttcaaagagtgactgccatgaacgcaatttttccacacggaaagattcagtt
acggacgagtttcaaactcaggtttcttcaaggctcataaaagaagattatgtatctggt
cccaatgtgcgtcgtagtcaccctactcaaactcttgatacgaagcctgtctatccaact
agcacatatgactcacatcataaacatcaacagggttcaaaccattcgtactacacatcc
agcttcaatcttcccagaagaaatagaggagactcgtcaaaccacccagtctcaaaccat
caatatgttcataagaaacaggttattaacgtggctccagtaaacacaaaaagtagcaga
gtttacaaacctcgggtaataaagcactcaagtcacatccgtgaacaagtaagacgtgga
gaaagagttccaaaacggtattctgctgtccgacaaaatgtatctaacattgattcatct
accgataaaaaaacactgcggctcccatctcctgtacgcactaaagagtcgtgtggttct
atcgacgttaaagatgtagcggttacaaagttaagcatcccagagaatgtacatgaggtt
actcaactacatgaatctgcagcggactgtagagacgtaactgcaactcaagatcaggtt
tgcactaaaataaccggtatcagcacgtttaatcaacaaaaagcggactctcaacgggtc
agtctcggcgtgcatccagtttctgtaacacatttccaaccctccatagaatatagcaca
cgtattcctgctgaatattcgtctatcaatccgcatttacaaactatatattgctccgat
atatttcagcatgatccacgctatcaacctcaaagcactgtgatgtcaaactgtgtacta
cctagtgctcagcaagctcagatgcatggtttatgtggaaatatgattcaaaatgtcaat
ttaccagtgccagtagcaactactctttgttttgaccctgtgccatgtggagtaacaaac
gaccctagtcaaacatacgtgatgcacttaggtataactgcgatggagcctcattggaat
agcgagaaaaaaccagtgttcaacctaagattcccgaagaaaccattggaagttattgat
cctcgtgatggaacaagagttaataaagttgcactttctgaaacgcagtag
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