Schistosoma mansoni: Smp_128600
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Entry
Smp_128600 CDS
T01095
Name
(RefSeq) putative chromodomain helicase DNA binding protein
KO
K14435
chromodomain-helicase-DNA-binding protein 5 [EC:5.6.2.-]
Organism
smm
Schistosoma mansoni
Brite
KEGG Orthology (KO) [BR:
smm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
smm03036
]
Smp_128600
Chromosome and associated proteins [BR:
smm03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
Smp_128600
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
CHDCT2
CHDII_SANT-like
ResIII
HDA2-3
DEAD
Chromo
AAA_22
HTH_CHD1_Hrp3
DUF1087
Motif
Other DBs
NCBI-GeneID:
8341553
NCBI-ProteinID:
XP_018654364
LinkDB
All DBs
Position
W:<18749576..>18777059
Genome browser
AA seq
1753 aa
AA seq
DB search
MSGAVLFTLNPSKARAYFRTKQKTSNQNLNTNSPKLSPNHECSQMEDGDHDKGPQIKDSI
NDDTTSKCVNTGSKLTTLVSHSSEEESDDEDNLSKWSKDAELDVNEWIANYPKRAGSRRR
YLLRWGVESHTLIPERVLAIGETFTPERFKKVEGIDNKDKSNRPPNKMKWPEYREVLVKW
LHLPYIHATWETVESDILSLNSHGVDHKSQKSVYKVLDPCGRNLLPRLVRRHIIRLADTY
CSRVATMLCDAYGNQLTPGRKNRSTANWKSKWIGEQPSYLSPVHRRVLHPYQIEGARWLW
HAYHNNINAILADEMGLGKTVQVIALLYSLWKEENDYGPFIIMTPLSTLQNWDREFSIWA
PDFYIVVYSGDKQVRAMLREYEFRLRNAGGIPAFHVLITSHELACIDRSFLKSFDWSVLV
VDEAHRLKNKQSRFFRYTSQYHTKFKILLTGTPLQNSLEELFHLLNFVEPKKFTDFRALS
EQWAEMPKTDRIKHLHDLLNRHLLRRLKCDVIQDLPKKTEIVVPVDMTLLQRRLYKYILT
SNYEELRCGNLMNSIVHLQKVCNHPYLMQIGDSIAPRLNLNDETNGPYEPKALVQVSSKL
VVLMELLRGLFVDDHRVLIFSRFTMMLDLLEQVMINARYKYVRIDGRVRGPLRQVTIDRF
NAPDSEYFIFLLSTRAGGEGINLASADTVVLYDSDWNPQWDLQALSRAHRIGQSKHVVIY
RFITRHSIEEKISQVARRKLALTQLIVDHNQKYPKAPEISSSPASNQHDSTQDNNSPKTD
SNVDNSRINQDCISRSDQDTNLVESTQRQSNTKSVSRLTRSEMDELLRSGVEALFASDDP
YTTKDLYDAARVDEIESKDTYQRIVYDSQAISKLLDRSKMMADSEETVSAFNEYLSGFRV
AHFDETDAESVDGFVTKDSEEQANRMEISEENPESVNPTMGTDGTYSESIGYADFWDRLL
HERYERLLNTEVEATSKSRRNHRSMHNPSVEDTVGDKFTDLNNDGIISKELKLEKDDGNS
TDSYISDKEKLFDRTKAVREVLKLRLSRQDKRKVFNLYHEFEDEKLELLVAELQNKYGNI
GHQKPKARPCLSKRMSASVKRARSSRVTPKRPYRRNAFGKSSTYHVTDFEDSLEECSMPD
ITSDDDPPYLPSDETDSAEPVKVKDSLASSRTRRSSTHAFLPTSEAVVDSSDSEEFLLWE
SSANVVNPLCWYPTADTYAKWRARVSDLGQHITWHRDELFIYNFGPNDRQLFNNAVMRFG
LPPPGIVPPQDWLPPALYYKSQFHLFGYVCLYMKHLYDDPNRLDESEESWSDGLPKEHLC
VPAVLSRIAVMALIRNKVLQYEDVNGPTSISTDIQSPTFKFAIHEGGLTLLRSVWNEEYA
KISNICQTIQSHSEIARNSELIIKTQRIWHSRHDYWLLAGILVHGYSRWADILADPRFRI
LNFGLSGVLKDMHKLMNTDLSSHYTSSASRQTPSESTEAQAFLLDRLKLLEQALIVEQTL
YEVAEAALSSTMPQNQVDPVRIRNLAICLSNKLIQTGARKRIALPKDPRAREATRTVVQN
LQELLEDMYADLPGMPASVTFTGDDDSNPKGTFNIISSGNTNNISIINSGRSYHLPKTIA
EITEVNLCDDDDIDNTGCSRHEDDNSQTPADKISRPGMEKFHPDSLMPRSESLKRNGSPQ
FEKGIFIELSDDEDVSSCIPDTDSTADQQANRNYDETNIQSNIGADNDNDINEHCALPNL
PNSRDDDLIHPNE
NT seq
5262 nt
NT seq
+upstream
nt +downstream
nt
atgagtggagcagttcttttcacccttaacccgagtaaagcgcgtgcttatttcaggact
aaacagaaaaccagcaatcagaatttaaatacgaatagccccaaattaagtccaaaccat
gaatgtagccaaatggaggatggagatcatgataagggaccacaaattaaggattccatt
aacgatgataccacctcaaaatgcgtaaacactgggtctaaactaacaacattggtttct
cattcgagtgaagaagagagtgacgatgaagataatttaagcaaatggagtaaggatgct
gagctggacgttaatgagtggatcgctaattatccgaaacgtgctggttcacgtcgtcgc
tatcttctacgttggggtgtcgaaagtcacacacttattcctgaacgtgttttagctatt
ggggaaacattcactcctgaaaggtttaaaaaggttgaggggatcgacaacaaagacaaa
tctaatcgaccacctaataaaatgaagtggccagaatatagagaagtccttgtcaagtgg
ttgcatttgccatatattcatgcaacatgggagacagttgaatcagatatattgagtttg
aactctcatggagttgatcataaaagtcaaaaaagtgtgtataaagttcttgatccttgc
ggacgcaatttattaccacgtctagtgaggcgacatatcattaggttagctgatacatat
tgttctcgtgttgcgaccatgctatgtgatgcgtacggaaatcaacttacaccgggaaga
aagaatagaagtaccgcaaattggaaatccaaatggatcggtgaacaaccttcttatttg
tccccagttcaccgtagagttcttcatccctatcaaatagaaggcgcgagatggttatgg
catgcatatcataataatatcaacgctattctggcagatgaaatgggccttggaaaaact
gttcaagtgatagctttactatattcactgtggaaggaagagaatgactatgggccattt
atcataatgacgcctctgtcaacattacagaattgggatagggaattttcgatttgggca
cctgatttctacatcgttgtttacagtggcgacaagcaagttcgtgctatgcttcgagaa
tatgaatttcgtttacgaaatgctggaggaatacctgcgttccatgtactgatcaccagc
catgaattagcttgtattgatcgttcatttttgaagagttttgattggagtgttttagtt
gtggatgaagctcaccgtctgaaaaataaacagtctcgttttttcagatatactagtcag
tatcatactaaatttaaaatcctcttgactggaacgccgttacagaacagtttagaagaa
ttatttcatctattaaattttgttgaaccgaaaaaattcactgatttccgagcattaagt
gaacaatgggctgaaatgccaaaaactgatcgtattaaacatcttcacgatttactcaat
cgtcatttattaaggcgattaaagtgtgatgtaattcaagatttaccaaagaaaactgaa
attgttgtcccagttgatatgactttacttcagagacgtctttataaatatattctaacg
agtaattatgaagaattacgatgtggaaatctaatgaatagtattgtacatttgcaaaag
gtttgtaatcatccatatttgatgcaaattggagattctattgcaccacgcctaaaccta
aacgacgaaacaaatgggccatacgaacctaaagctttggtacaagttagcagtaaattg
gttgtactaatggaattacttcgtggattgtttgttgatgatcatcgcgtattgattttt
tcccgcttcacaatgatgttggatttattggaacaggttatgattaatgccaggtataaa
tatgttcgcattgatggtcgtgtgcgcggtcctttaagacaggttactatcgatcgtttc
aatgcacccgactcagaatatttcattttccttttatctactagagccggtggagaagga
atcaatcttgcttcagctgatacagtcgtactgtatgattccgattggaatcctcaatgg
gatttacaagccctttctcgggctcatcgaattggtcagtccaagcatgttgttatttat
cggttcataacacgtcacagtattgaagagaaaatatctcaagtggctaggcgtaaactt
gcccttactcagttaattgtcgatcataatcagaaatatccaaaggcaccggaaatttct
tcaagtcctgcatcaaatcagcatgactcgactcaagacaataactcaccaaaaacagac
tcaaatgttgataactctagaattaaccaagattgcatctccagatctgatcaagatact
aatcttgtagaatcaacacaaagacaatctaatactaaatcagtaagcaggctaacacgt
tcagaaatggacgaactattacgctcaggtgtagaagctctatttgcttcagatgatcct
tacactacaaaggatttgtacgatgcggctcgagtagatgagattgaatcgaaggatact
tatcaaagaattgtatatgattcacaggctatttccaaactcctggatcgttcaaaaatg
atggctgattccgaagagacagtttcagcttttaacgaatatttaagcgggtttcgagta
gcgcattttgacgaaacggacgctgagtctgtggatggttttgtaacaaaagatagtgaa
gagcaggctaacagaatggagatctctgaagaaaatcctgaatcagtcaatccaaccatg
ggtactgatggaacatattctgaatctatcgggtatgctgacttttgggatagacttctt
catgaacgctatgagcgtctcttaaatactgaagtcgaagcaacaagcaaatccagaaga
aaccatcgaagcatgcataacccaagtgttgaagatacagtaggtgataagtttactgat
ttgaataatgatggtatcatcagcaaagaattgaaactagaaaaggatgatggaaattcg
actgattcatatattagtgataaagaaaaactgtttgacagaactaaagctgtacgtgaa
gtgcttaagttacgcttgtcccggcaagacaaacgtaaggtgttcaatctttatcacgaa
ttcgaggatgaaaaattggaattgttagttgctgaactccaaaacaaatatggaaacatc
ggtcatcaaaaaccaaaagctagaccttgtttatctaaacggatgtctgcatctgtcaaa
cgagctcgatcatcaagagtaactcctaaaagaccatatcgtcgaaatgcttttgggaag
tctagcacttaccacgttacagatttcgaagattctttagaggaatgctccatgccagac
attactagtgacgatgatcccccttatctgccgtctgacgaaactgattcagcagagcca
gttaaagtaaaagattcactagcatcaagtcgtactcgaaggtctagcactcatgcgttt
ttgccaacttcagaagctgttgttgatagcagtgacagtgaagagtttcttctctgggaa
tcatctgctaatgtagtcaatccactttgttggtatcccacagccgatacttatgccaaa
tggagagcacgagtttccgatcttggtcagcatatcacgtggcatcgggatgagttattt
atttataactttggccctaatgatcgtcaattgttcaacaatgctgttatgaggttcggt
cttccaccacctggtattgtcccacctcaagattggcttccaccagccttatattataaa
tctcaatttcacttgtttggttacgtatgtctatacatgaaacatttatacgatgacccg
aatagattagatgaatctgaagaaagttggtccgatggtttacctaaagaacatttatgt
gttcctgcggtgctttcacgtattgcagtgatggccttgattaggaataaagtattacaa
tatgaagatgtcaatgggccgacaagtatttctactgatattcaaagtcccactttcaaa
tttgctatacacgaaggtggtttaacgttattacgttctgtgtggaatgaagaatatgcg
aaaatcagtaatatttgtcaaacaattcagtcccattcagaaatagcgagaaattcagag
ttaatcataaaaactcagagaatatggcattcacgtcatgattactggctacttgctggc
atacttgttcatggctattctcgatgggctgatatattagctgatccacgttttcgtatt
cttaattttggattatcaggagttctaaaggatatgcataaacttatgaatactgaccta
agttcacattacacatcatccgcttctcgtcaaactccttctgaatcaactgaagctcaa
gcattcctattagatcgcttgaaattacttgaacaagcattaattgtcgaacagacgttg
tatgaagtcgctgaggctgctcttagtagtaccatgcctcaaaatcaagtggacccagtt
cgtattagaaatttggctatttgcttgtctaataaattaattcaaacaggagctcgtaaa
cgaattgctttacctaaggatccaagggcgagagaagctacacgtacagtagtacaaaat
ctacaagaattattagaggatatgtacgcagatcttcctggtatgcccgcttcagtaaca
ttcactggagacgatgattccaatccaaaaggaacatttaatataatatccagtggaaat
acaaataatatcagtattatcaacagtggtcgttcatatcatttgccaaaaactattgca
gaaattacagaagtcaatttatgcgacgatgatgatattgataacactggttgtagtcga
catgaagacgataatagtcaaacacctgctgataaaataagtcgtcctggtatggaaaaa
tttcatccagatagtttgatgcctcggtcagaatcgcttaaacgcaatggctcaccacaa
tttgaaaaggggatttttatcgaattgtctgatgacgaggacgtttcgagttgtattcct
gataccgacagtactgctgatcagcaagcgaaccgcaattacgacgagactaacatacag
tctaacattggtgctgataacgataatgatattaatgaacactgtgcattacctaatcta
ccgaactcaagggatgatgatctgattcatccaaatgaataa
DBGET
integrated database retrieval system
