Schistosoma mansoni: Smp_133990.1
Help
Entry
Smp_133990.1 CDS
T01095
Name
(RefSeq) putative topbp1
KO
K10728
topoisomerase (DNA) II binding protein 1
Organism
smm
Schistosoma mansoni
Pathway
smm03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
smm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
Smp_133990.1
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
smm03032
]
Smp_133990.1
03400 DNA repair and recombination proteins [BR:
smm03400
]
Smp_133990.1
DNA replication proteins [BR:
smm03032
]
Eukaryotic type
DNA Replication Initiation Factors
Other initiation factors
Smp_133990.1
DNA repair and recombination proteins [BR:
smm03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-B complex
Smp_133990.1
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCT
PTCB-BRCT
BRCT_2
RTT107_BRCT_5
BRCT_TopB1_SLF1
TopBP1_BRCT0
ECT2_BRCT0
PIG-S
Motif
Other DBs
NCBI-GeneID:
8343458
NCBI-ProteinID:
XP_018649672
UniProt:
G4VDW1
LinkDB
All DBs
Position
2:3324287..3342732
Genome browser
AA seq
1396 aa
AA seq
DB search
MDEIIFVNEPPSSLLNAAFNAVSEYENICPKRLSSCEVIKLYPLKPSKDVCFVLARFDGE
CYDHLRSLGVSIYGPQVILHYVRENKPLPNLPYPLFSTALLNATATVTSVTGAQRKQIFD
SIQMLHGSVSRDLTDNVNVIVTAKVGSKKYLVGASRNLHILLPDWITEAWRLSEIQDPID
MMLGIYTEKYRVPIFSQLVICVSGLSVEERKEVSDLVSKHGGKYSGVMKIGETTHLVTRQ
ASGTKYVHAKKWKIQIISIKWLIDSVDKGYALDEEDYRVDQAKTKSSTPTPNTQQNEISF
DNISAISYVGAASKVDETRSVCFRESAQVVSIQSGSSILSGCSIRFSDCKKDEVHLYSSI
VRELGGKLCTELFDQVTEMLTHVVVGSIPSSNNMSREKGVKYIKGAWLLACRDSKVRIPE
DEYLIPEINENFQRLEDEVDVTSTNIDAADFQLINQYFTGGLADDEFQDEAVETRGVIQG
FDKTSIRPEIADEVKHPEASEISHLGGCFSNLVFSFHKELSDADIIKCTDIIKTAGGCIS
DNEHNVNFLVTPFFVTNLPLISSCEFVTVGWISYCIHEKSLCLQEIRKECAFKPVLHKPG
PPPLSGCVISLSGFVGNDRGLLTSYAQALGAVVQECFLRKSVASRNLAASTHLVAAKPDG
RKWPAAQQWGLPAVSRLWLYKCAETWSLVNECEFPVYDTSKDSRISNNEDLTVISEEVKV
RECGMLKNIPSFRKSASGKTTENPEYNLALSNLAETMQTPDWLQDFREGRSSKLNSSLHS
LSYSYKPSPTFSVQVSRCLKNAVQETSALPKRKLELSDDEEDSLCLRGVVICVAKHLSSR
QVELNDIVKKLGGDFKWTYNPEVCTHMISETSPDDTLPPSTPSTIPVTPSTCPEGQLVYA
DVAAAKQDGKYLVNPKWLTSCMVACCRLPESDFPPTCLDGKTSVSTSPVEPQPKAARVAS
LNLFGDINRRLGMMIAGNKTNCFQNGFKNNFKENMDPTTNTDGSHQQFLNKEDQNLENGE
FIDSQFPSVPTGHRRLRRNPRRSNYSTTNRSDTTITSHESKSNNDNDNDRSKVGNSNNLN
NNVDLVQPGQMIMVRWKYEDDTPHQTTTTTTTTSTDLVISKANCEKNQSENKIEQTLLRE
NITQKSDNQSSFKSPIQKQQQPQQPDCLSPKRNYIISFTGLSLEERDRYAEIVERLGGEV
DNLTTLSEKTTHLIVYAPTRSEKCLICLASGKWMLHKSYLDACSRESCWVDEAAYEWGGP
GTEPLLMQLSPFPCPPGGPTLSHQQKAAQIRDLARSARRWRLSGGKAFHNWKVIFGPGCD
KESSFRRIIEAGGGKVLSSSPPYPPAHEVTHAFVKINNNSAIIPSTLPRNYSWLRIDYLC
SYLSSGEEISKSEFTL
NT seq
4191 nt
NT seq
+upstream
nt +downstream
nt
atggacgagattatttttgtcaacgaacctcccagttcactattaaacgctgcatttaat
gctgtttccgaatatgaaaatatttgtccgaaacgtctaagttcttgtgaagtcattaag
ctatatccattgaagccttctaaagacgtttgttttgtgcttgcccgctttgacggtgag
tgttacgaccatcttcggtcacttggagtatcaatttatgggccacaagtcattcttcat
tacgtaagagagaacaagccgttaccaaatcttccgtatcccctgttttcgacggccctc
cttaatgccactgccacagttacatccgtaactggagcccagaggaagcaaatattcgat
tcaatacaaatgttgcatggttctgtgtcacgagacttaacagataacgtgaatgtcata
gttacggccaaggttggttccaaaaaatacttggtgggcgctagcagaaatctccatatt
ttgcttcctgactggattacggaggcctggcgtctttcagagattcaagatcctatagat
atgatgttagggatttacactgagaagtatcgcgtcccaatcttttctcagcttgttatc
tgtgtttcaggtctgtctgtagaggagcgtaaagaggtatctgatttagtctccaaacat
ggggggaaatactcaggtgtaatgaaaataggtgagacgacgcatttagtaactcggcaa
gcatcaggaacaaaatatgttcatgctaaaaagtggaagatacagataataagtatcaag
tggcttatcgactcagtagataaaggatatgctcttgatgaggaggattatcgagtagac
caagctaagacaaaatcttcaacaccaactccaaacacacaacaaaatgaaatctccttc
gacaatatatcagcgattagttatgttggtgctgcttctaaggttgatgaaactcgaagt
gtatgtttcagagagagtgcgcaagttgttagtattcaaagtggtagttctatcctttct
ggttgttcaattagattctctgattgcaaaaaagatgaggttcatttgtactcgtcaatt
gttagggagttaggtggaaaattatgcacagaattgtttgaccaagttacagaaatgcta
actcacgttgttgttggaagtattcctagctccaataatatgtcgagagaaaaaggtgtt
aaatacatcaagggagcgtggctacttgcatgtcgggattcaaaagttcgtattccggag
gatgaatatctcattcccgaaataaacgaaaactttcaaaggcttgaggatgaagttgac
gttacttcaacaaatatagatgcagctgacttccagttaattaaccagtattttacaggt
ggtctagcagatgatgaatttcaggatgaagctgttgaaacaagaggggttatccaaggt
tttgataaaacttcaatcagacctgaaatcgccgacgaggttaagcacccagaggcttct
gaaatatctcatcttggtgggtgcttttcaaaccttgtattctcttttcacaaagaatta
agtgatgcagatattatcaaatgtactgacataattaaaacagctggaggttgtatctcc
gacaatgaacataatgtgaatttcttagttactccatttttcgtcaccaaccttcctctt
attagttcttgtgaatttgttactgtcgggtggatttcgtattgtattcatgaaaagagt
ctttgtttgcaggaaatcaggaaagaatgtgcatttaaacctgtgttacataaaccaggc
ccaccaccgttatctggatgcgtcatttcactaagcggttttgtaggcaatgataggggt
ttattaacttcatatgctcaagctcttggggctgttgtccaggaatgcttcttacgcaag
tcagtagcatctaggaatctcgccgccagtactcatctggttgcagctaaaccagatggg
cggaagtggcctgctgctcaacaatggggtcttccggctgtcagtcgtctttggctttat
aaatgtgctgagacttggagtttagttaatgaatgcgaattcccagtatacgatacaagt
aaggattctagaatcagtaataacgaagatttaactgtaatttccgaagaagtaaaggtc
agagagtgtggcatgttgaaaaatattcctagttttcgtaaatcagctagtggtaaaact
actgagaatcccgaatataacctggcacttagtaacctagcagaaacaatgcaaacccct
gactggcttcaagattttcgcgaaggtcgttcatcaaaattaaattcgtcacttcattct
ttaagttattcatacaaaccgtctccaactttttctgtgcaagtgtccagatgcctgaaa
aatgcagtccaagaaacatcagcgctacccaaaagaaagttggaactttcagatgacgaa
gaggatagcttgtgcttacgaggagtagtaatatgtgtggcgaaacacttaagttctcgc
caagtggagctaaatgatattgtgaaaaaactgggtggagatttcaagtggacttacaat
cctgaagtttgtacacatatgatctctgaaacttcacctgatgacactttacccccatca
acaccatccactataccagttacacctagtacctgtccagaaggccaacttgtttatgcc
gatgttgctgctgccaagcaagatgggaaatatctggtcaatccgaaatggttaacctca
tgtatggtagcctgttgtagattacctgagagtgatttccctcctacatgtttggatgga
aaaacatctgttagcacatctccagtagaaccacaaccaaaagcagcacgagttgcttct
ttaaatcttttcggagatattaatcgtcgattgggaatgatgattgctgggaataaaact
aattgctttcagaatggatttaaaaataatttcaaggaaaatatggatccgactaccaac
accgatggtagtcatcaacagtttttaaataaggaagaccaaaatttggaaaatggagag
tttatagattctcaattcccatcagttcctacgggtcatagacgtcttagacgaaatcct
cgtcgtagcaattattcaactactaatcgttcagatactactataacttctcatgagtcc
aaatcgaacaacgataatgataatgatagatcaaaggtagggaactcaaacaatctaaat
aataatgttgatttggtacaacctggccaaatgatcatggttcggtggaagtacgaagat
gacactccacatcagacgacgacaacgacaacaacaactagcactgatcttgtaatttca
aaagcaaactgcgaaaagaatcagtctgaaaataaaattgaacagacattattaagagag
aatattacacaaaaatcagataatcaatcatcgttcaaatcaccgatacaaaaacaacaa
cagccacaacaacctgattgcctatcacctaaacgaaactatataatctctttcactggc
ctgtcattagaagaacgagatcgctatgctgaaattgtagagcgactaggtggagaagta
gataatctgactacgttaagcgagaaaactacacatctaattgtgtatgcaccaacacga
agcgaaaaatgccttatctgtctcgcttctggcaagtggatgttgcacaaatcctactta
gacgcatgctcacgggaatcctgttgggttgatgaagcagcatatgagtggggtggtcct
ggtactgagcccttattgatgcagttaagtccgtttccttgtccacccggtggtcctaca
ttatcacatcaacagaaagctgctcagattagagatctagctagatctgcacgtcgttgg
cggttgtctggaggcaaagcatttcataattggaaggttatttttggacctggttgtgat
aaagaaagtagttttagacgtattatcgaagctggtggaggaaaagtattatcaagcagt
ccaccctatcctcctgctcatgaagttactcatgcatttgttaaaataaataataattct
gccatcataccttccactttaccgcgtaactactcatggctgcgcatagattatctttgt
tcctatttaagttctggtgaagaaatctcaaaatcagaattcactctttaa
DBGET
integrated database retrieval system
