Schistosoma mansoni: Smp_140530
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Entry
Smp_140530 CDS
T01095
Name
(RefSeq) putative replication factor C / DNA polymerase III gamma-tau subunit
KO
K10755
replication factor C subunit 2/4
Organism
smm
Schistosoma mansoni
Pathway
smm03030
DNA replication
smm03410
Base excision repair
smm03420
Nucleotide excision repair
smm03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
smm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Smp_140530
03410 Base excision repair
Smp_140530
03420 Nucleotide excision repair
Smp_140530
03430 Mismatch repair
Smp_140530
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
smm03032
]
Smp_140530
03036 Chromosome and associated proteins [BR:
smm03036
]
Smp_140530
03400 DNA repair and recombination proteins [BR:
smm03400
]
Smp_140530
DNA replication proteins [BR:
smm03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
Smp_140530
DNA Replication Termination Factors
ELG1-RFC complex
Smp_140530
Chromosome and associated proteins [BR:
smm03036
]
Eukaryotic type
Sister chromatid cohesion proteins
CTF18-RFC complex
Smp_140530
DNA repair and recombination proteins [BR:
smm03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
Smp_140530
Check point factors
HRAD17(Rad24)-RFC complex
Smp_140530
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac_C
AAA
DNA_pol3_delta2
AAA_14
AAA_22
Viral_helicase1
Rad17
AAA_16
Mg_chelatase
RCF1-5-like_lid
ABC_tran
AAA_11
AAA_19
nSTAND3
AAA_assoc_2
ATPase_2
RuvB_N
RNA_helicase
AAA_24
AAA_28
NTPase_1
AAA_30
AAA_18
AAA_5
MeaB
MipZ
AAA_2
AAA_25
SRP54
DNAX_ATPase_lid
Chap-C
AAA_7
SRPRB
ORC-CDC6-like
Motif
Other DBs
NCBI-GeneID:
8343254
NCBI-ProteinID:
XP_018648212
LinkDB
All DBs
Position
1:23578727..23598799
Genome browser
AA seq
468 aa
AA seq
DB search
MPPKSIQDLRTTVLRFAAADKLSNAVNTPHLSANAIEQPEETHQSDFTQTISAVKRRPKR
QPLRTNQHNRKMECFYCQRFGRKARKCGHNNFWKQVLRSPILNNTAQSSAAEMSSLCASS
LSRLKVVAISTPMVSSPVDLTSDLPVARKAMESPWVEKYRPIELEDIVGNENTICRLSVF
ARDGNLPNIIIAGPPGCGKTTSILCLARTLLKSAYKEAVLELNASNERGIEVVRTKIKMF
AQKKVSLPEGRQKIIILDEADSMTEGAQQALRRIMELYSRTTRFALACNDSSKLIEPIQS
RCAVLRYARLTSAQVMARLLEVSRFEGVSYTEEGLEAIVFTADGDMRQALNNLQSTHEGF
GMVSSDNVFKVCDEPHPMLIKQLIDHCSKGELSAAHKILRHLWTLGYSAEDIITITFRVI
KNHPMEEYLKLGFIKEVGLTHLRISEGLGTYLQLAGLLARLCKIVLPK
NT seq
1407 nt
NT seq
+upstream
nt +downstream
nt
atgccgccaaaaagcattcaggatttaagaaccacagttctacggttcgctgccgcagac
aagctatcaaacgctgtcaatacaccgcatttgtcagcgaatgctattgaacagcctgaa
gaaacacatcagtccgatttcactcaaacgatttccgcggtcaaacgacgccccaagaga
cagccgctaagaactaatcaacataaccggaagatggagtgtttttactgccaacgcttt
ggccggaaagcccgaaaatgtgggcacaataatttttggaaacaagtacttcgtagtcca
attttaaacaacaccgcacaatcctcagctgccgaaatgtcgtcattgtgtgcaagtagt
cttagccgacttaaggtcgtggcaatttcaacacctatggtttcgtctccagtcgattta
acatctgacttaccggttgctaggaaggcgatggaatcgccttgggtcgaaaaatataga
cccattgagttagaagatatcgtgggtaatgagaatactatttgtcgtctatccgttttc
gctcgtgacggcaacttaccgaacatcataatagctggtcctccaggttgtggaaaaacc
acaagtatcttatgcttggctcgtactctgctgaagagtgcttataaggaagcggtcctt
gagttaaatgcatcgaacgaaaggggtatcgaagtagtaagaactaaaatcaaaatgttc
gcccagaaaaaggtcagtcttcccgaaggaaggcaaaagataattatcctcgatgaagcc
gacagcatgactgaaggtgctcaacaggcacttcgacggatcatggagttatactctcga
acaactcgttttgcattggcttgtaatgattcctcaaagctcatcgaaccaatacaatca
agatgtgctgttttacgttatgctcgtttaacatctgcccaagtaatggctagattacta
gaagtttcgcgtttcgaaggtgtttcatatacagaagaaggtttggaagccattgtgttc
acagcggacggtgacatgagacaggctctaaataatctacaatcaactcatgaaggcttt
gggatggtcagtagcgataacgtctttaaagtttgtgatgaacctcacccaatgcttatt
aaacagttgatcgaccattgttctaagggtgaattgtcagctgctcacaagatcttgcgt
catttatggactttggggtattcagctgaagatattatcaccatcactttccgagtaata
aaaaatcatccaatggaagagtatctcaaattgggatttataaaagaagttggcctcact
catttacggatttccgaaggactaggtacatacctacaattagcaggtctccttgctcgc
ctctgtaaaatagtgttaccaaaataa
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