Schistosoma mansoni: Smp_144910
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Entry
Smp_144910 CDS
T01095
Name
(RefSeq) putative collagen alpha-1(V) chain precursor
KO
K19719
collagen type II alpha
Organism
smm
Schistosoma mansoni
Pathway
smm04512
ECM-receptor interaction
smm04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
smm00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
Smp_144910
04518 Integrin signaling
Smp_144910
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
smm00536
]
Smp_144910
Glycosaminoglycan binding proteins [BR:
smm00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
Smp_144910
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
8345587
NCBI-ProteinID:
XP_018652257
LinkDB
All DBs
Position
4:complement(21639382..>21660329)
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AA seq
991 aa
AA seq
DB search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NT seq
2976 nt
NT seq
+upstream
nt +downstream
nt
atgacaaaactagggactaataaaataggtgaacgagttgtacgtattcgaagacaaggt
gatggtgtcttagatgaagatatctcagcgagtggtggagacgatgatatacccgaaact
actccaataccatcgagtgttaaaggtcctggaccatttttacaaccaaatatagtaaca
ggtcctcgaggggctccaggtgaacctggtccacctggaccatcagggcctattggacca
ccaggaaaaatgggtgaacccgggccaccgggaccagctggagaagatggtgcacgtgga
ccaccaggtccatctggtgacccaggaatcgacggtaaaccaggtctagatggtgaatct
ggtctgcgtggaactccaggtccaccaggaccagttggtccaatgggtttaattggatct
acaggtccaccgggtccaatgggtatacctggtcttaaaggtataaaaggctccccaggt
attgatggaccaatgggtgaacgaggtgaagttggccttccaggtccatttggtccacct
ggacctaaaggaccaactggattacctggtgctcaaggcccagttggtcaaatgggtaca
caaggaccggatggatttcctgggcttataggttctatgggtcctcaaggacctccagga
ccttctggaatgattggaccagttggtttaaaaggtgatgagggacttcaaggtgcacca
ggttctcttggtgatcctggtgatccaggtttagatggaagtccaggggctgatggtgaa
cctggaccgatgggtcctgctggtaaggatggaccgtcaggattgaaaggtgaaagagga
ataccaggccctatggggccccagggaactaccggcccaagaggattgtctgggggacca
ggttcacaggggactcctggagagaaaggggctgaaggggctccaggaccacaaggatct
acaggtccagctggaccaatgggaccacctggagaacctggtgatagagggctatttggt
ccaatgggagatataggaaagcctggtccacgaggtccaccaggtgaaactggaccgaaa
ggagatacagggctgattggtgctcaaggaatgccaggtaatcctggattagacggacta
cctggaatgcctggagaagccggtaatgatggagaaatgggtagacaaggtatgcccggt
ccaccgggattacctggaccatccggacgagatggtgaacctggtcccaggggttttcca
ggttccaagggtcaagatggctcccaaggtgtacgtggcgtgataggaccaagaggccct
tcaggaaaagatggggatgacggtgaaatgggtgcggcaggacctccaggacctgcagga
cctcctggcccatctggaccgccgggtttacgtggtggtcgaggctcatctggtgagcca
ggtgatccaggtccttcaggtccacaaggtagtcgtggtgcaactggtgctcgtggacgt
cgtgggaaagttggagttcctggtagtcctggaagtattggcggtattggagatagaggt
ccacctggtccaattggaccatcaggtcaacctggtcctattggacaaccaggccaacca
ggtggtaaaggtccaactggaagagatggaaaacaaggcacagatggaaagccaggaact
caaggacaggttggtttaccaggtccaattggtgaacgtggtgctgctggtgaagacggt
gaacaaggttatccaggtgtacaaggccccaaaggtgaagttggttcacaaggtatacct
gggcgtactggaccagctggtccaccaggagttcgaggtggttcgggtcaaatgggtttg
agaggaactaaaggtccacgtggtccacctggagaagatggaccacctgggaaggacagt
gcacctggtgaaccaggaccaccgggtgaaccaggtccacgaggaccaatccaagttcaa
ggttatgataatggtaaagttgtcggcccacaaggagcgaagggtttaccaggatatcct
ggaccacgtggaagaccaggaataccaggagctcctggtgatccgggacctattggagaa
gcaggagtaccaggtgaagacggtccacccggtcctgatggtccacgtggaaaagatgga
attgatggagcacctggccgaccaggaaaatcaggtaaacctggtcagtctggagctgtt
ggagcccaaggaccacctggaaaacctggagatgctggatatgctggtccaccaggacca
tcgggaattcctggtccttctggtgaacccggtttacccggaatagatggtattaatgga
actgctggtgcccaaggagctcctggcaatccaggtgcacaaggagcacgtggtgctgcc
ggacctccaggaattgatggtgctaaaggtccacctggtgatgaaggaccaactggtccg
agaggtcaagctggtccaagaggaactcaaggaaaagatggacttcctggacttcagggg
aaaatgggtgctcctggaagaccaggggcaagaggatcggccggggttatgggagttccg
ggaccacaagggaagattggaccttcaggtaaagaagggccagaaggaccgtctggtcct
gttggtccacctgggccaccaggaacagatggggaagtaggtggtgcagggccagtggga
gaagctgggtctccaggacaacaaggtcttcctggagaacgaggacttcagggtccacca
ggtcctgggggagagccaggcccaccagggcctagtggtcctttagggatacctggacca
gacggaccgagtggacctagaggtgaagtaggtgatcctggtatagatggtgcgccaggg
gggaaaaggcgaagatggacaacctggactgcctggacgacctggaaaggatggatcacc
aggaaggcaagggaagtctggaccacaaggccataa
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