Schistosoma mansoni: Smp_152840
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Entry
Smp_152840 CDS
T01095
Name
(RefSeq) putative atp-dependent RNA helicase
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
smm
Schistosoma mansoni
Pathway
smm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
smm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Smp_152840
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smm03019
]
Smp_152840
03012 Translation factors [BR:
smm03012
]
Smp_152840
Enzymes [BR:
smm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
Smp_152840
Messenger RNA biogenesis [BR:
smm03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
Smp_152840
Translation factors [BR:
smm03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
Smp_152840
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
HA2_C
OB_NTP_bind
AAA_19
AAA_22
nSTAND3
ATPase
HA2_N
PhoH
Cas3-like_C_2
NB-ARC
ABC_tran
DUF4573
TsaE
Motif
Other DBs
NCBI-GeneID:
8345772
NCBI-ProteinID:
XP_018648522
LinkDB
All DBs
Position
1:32033807..32075741
Genome browser
AA seq
1006 aa
AA seq
DB search
MFLPILGRRVVFLVCISMSRANKGHRPPGLRGKEIGLWHAAQSKNRCTGHLDYQTKFASM
PLVGLNLPKIQSVIQEFVEPVPELPKTSNELISFMCKLPTLSTSKQTPEDEAEELFGEIR
DCFDVSVGPCSDPDQMLLTKESLARNPDIDHELCLSMRNCMSSAAYMKMSESRCKLPAYQ
FKEDIVSTIRDNQVVIISGETGCGKTTQVPQFILEDQVLGGNGSVTRIIVTQPRRISAVS
IAERVATERGQSVGSSVGYQVRLERRYPQRPHGSIMFCTTGIILQWFRSDPLLKNISHII
VDEVHEREFLCDFLLCMLKRIAPLRPDLRIVLMSATINADKFVEYFDNCPKFEIPGRTFP
VKTYYLEDVLRETKFWLPNSAITALCRDQSRTLKQRLLKSNLSKKEARILSYGKSPEFNK
WLHSLTGLSSNAIEILRSVGEDTYPKTDLIAHSVEHILQSTQSGAILVFVPGLVDIKDVI
RCLRELNPRRYDNRYGSVRIYPLHSRIPTSRDRSLFEPSPKNQRKVVIATNIAETSITIQ
DVVYVIDCGRIKVTDYDPRQNTSTLTAILVSKANAAQRSGRAGRVQPGICYHLFPSYVYN
NVMSDFLQPEMLRVRLEDVILRIKLLGLGRVKSFLTNCLDSPSEDAISKTLIFLRQIQAL
KLIESETSNFNTSHSIKSRGQSHKLNRKSLREFSEAIKKDVNASGINILGSSCIHLDSTD
EDDDELTPLGVHLANFPLDPQCAKLLIFGALFGCLEPILAVASCLTFRDPFEVPLEKQQE
ADRCRKELSQNSFSDHWVFATVIQSYNGLNSQIERHQFCQRYFLNERNINLFRAIMCAAL
YPNVVKVDPRFTKEGKPKTSVIMACPSEGRANIHPSSVNSKIQPTEPIWMVYFTKTKLES
GSYPSIFDSTVISLRPLLFFSGNIEISKNDTSLFTIDQWIKFSGELKVVNLLKDLRKCMD
GLLEQKFKSPSVANWDSTNKEGRLLQTIVDLLTSEPPPAVQVEKLS
NT seq
3021 nt
NT seq
+upstream
nt +downstream
nt
atgtttctgcccattcttgggcgccgtgtagttttcttggtttgtattagtatgtctcgg
gctaacaaaggtcatagaccaccgggtttgagaggaaaagagataggtctttggcatgct
gctcaatcgaaaaacagatgtacaggtcatttggattaccagactaagtttgcttctatg
cctcttgtcggcctgaatcttccgaaaattcagtcagttatacaagaatttgtggagcca
gttcctgaactccccaaaactagtaatgaacttatttcattcatgtgtaaactcccaact
ctcagtacttcaaagcaaactcctgaagacgaagcagaagaattatttggcgagattcga
gattgctttgatgtctcagtgggtccatgctctgaccctgatcaaatgttattaacaaaa
gaaagcttggctcgaaatccagacatcgatcatgagctctgtctttcaatgcggaactgc
atgagttctgctgcctacatgaaaatgtcagaatccaggtgtaaacttccagcgtaccag
ttcaaagaagatattgtctcaactattcgagataaccaggttgttataataagcggtgaa
acaggttgtgggaagactacacaagttccacagtttattttggaagatcaggtcttaggt
ggaaatggatctgttacgcgtatcattgtaacacaacctcggcgtataagtgctgtttcg
attgctgaacgtgtagcaactgaaagaggacaatctgtaggatcttctgttggctatcag
gtccgattagaacgccgatatcctcaacgtcctcatggatctatcatgttttgtacgaca
ggcattattcttcaatggtttcgttctgatccacttttgaagaacatcagtcacatcatt
gttgatgaagtacatgaacgggaatttttatgtgattttctattgtgtatgctaaaacga
attgctcctcttcgtccagatcttcgaatagttctcatgtcggcaacaatcaatgcagac
aaatttgttgaatattttgataactgtcctaaattcgaaattcctggtagaactttccca
gtgaagacatattatttagaagatgttttgagagaaactaaattttggttgccgaatagt
gctataactgctttatgccgtgatcagtcacgtacattaaaacaacgtcttttaaaatct
aatctttcaaaaaaagaagctcgtatattatcttatggaaaaagccctgaattcaataag
tggttgcattcgttaacaggattatcttcaaatgcaatagaaattttacgtagtgttgga
gaagatacctaccctaaaaccgatcttattgcacattcagttgagcatattttacagagt
acacaatcgggtgcaatacttgtatttgttccaggtcttgtcgacataaaagatgtaatc
agatgtttacgtgaattaaatccaagacgatatgataatcgctatggaagtgttagaatt
tatccattgcattcaagaatccccacgtccagggaccgctcactgttcgaaccctcacca
aaaaatcaaagaaaagtggttatagcaaccaatattgctgaaacgagcataaccattcaa
gatgtagtttatgtgattgattgtggtcgtatcaaagtgacagattatgatccgagacag
aacacatcaaccttaactgcgattcttgttagcaaagccaatgcagctcagcgttctgga
agagctggtcgtgtacagcctggcatctgttatcatttattcccaagttatgtgtataat
aatgttatgtcagatttcctacaaccagaaatgttacgtgtccgtttagaagatgtgatt
ttaagaattaaattgctaggccttggccgtgtaaagtctttcttaaccaactgtcttgac
tctccttctgaagatgctatttcaaaaaccttaatatttcttagacaaattcaagctctg
aagctaatcgaatcggaaacatcgaattttaatacatctcattcaataaaatctcgtgga
caaagtcataaacttaatcgaaaatctcttcgagaattttcagaagctattaaaaaggat
gtaaacgctagtggtataaatattttgggttctagttgtatccatttagattcaacagat
gaagatgacgatgagttaactcctcttggtgtacatttagccaatttccctttggatcca
caatgtgctaaactcctaattttcggtgcattattcggttgcttagaaccaattttagct
gttgcttcgtgtttgacatttcgtgatccattcgaagtacctttggagaaacaacaagag
gctgaccgatgtcgaaaggaattgtctcagaattcttttagcgaccattgggtatttgct
acagttattcaaagttataacggactgaattcacaaatcgaacgtcatcaattttgtcaa
agatattttcttaatgaacggaatatcaatcttttccgagctataatgtgtgcagcatta
tatccaaatgttgtaaaagtggatccaagatttactaaagagggcaaacctaaaacatca
gtcattatggcttgtccatctgaaggtagagcaaatattcatccatcatcagtaaatagt
aaaattcaaccaactgagcctatatggatggtttattttacaaaaactaagcttgaatca
ggatcttatccatccatattcgactcaactgttatatcactgagacctttgctatttttc
agtggtaatatagaaatatcaaagaacgatacaagtcttttcaccattgatcaatggatt
aaattcagtggggagttgaaagtagtcaatttattaaaagatttacggaaatgcatggat
ggactgttagaacagaagtttaaaagtcctagcgtggctaactgggatagcacaaataag
gaaggacgactcctccaaacgattgtggatttattaacaagtgaaccccctccagctgtt
caagttgagaaattatcttaa
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