Schistosoma mansoni: Smp_161980
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Entry
Smp_161980 CDS
T01095
Name
(RefSeq) ribonuclease II-related
KO
K18681
DIS3-like exonuclease 1 [EC:3.1.13.-]
Organism
smm
Schistosoma mansoni
Pathway
smm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
smm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Smp_161980
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smm03019
]
Smp_161980
Messenger RNA biogenesis [BR:
smm03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
Smp_161980
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_Dis3
Rrp44_CSD1
CSD2
OB_HELZ2
Motif
Other DBs
NCBI-GeneID:
8349238
NCBI-ProteinID:
XP_018647748
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All DBs
Position
1:complement(10277961..10304675)
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AA seq
991 aa
AA seq
DB search
MNWVAANWYINHLKGHVSLVFVTDNENYVHTYSSETNTTSCKLTVLDLPGFLQMYYPTLT
TAKLLFDSLDVSLRSIQSKDHNLPELSKSENPSESLDSYIMPSVPSVGHIYPEYLPESAL
AAGLRSGQFLKGILHVSRFRPTTEAMVALTDAVKHQPELKEALAARSEIMIHGLQHRNRA
VDGDVVVVRLLPRVHWKTVSSDISAQENCAAEFVNDLSNMSGSKPNEDCFKSETISRSLP
CGFVVGVISHNWRDYVCTYVPKSTENSLDSKSESGWIIVTPWDRRIPLIRLHTTQISKLT
RERFIVRIDTWDSYSAYPSGHFVQTLGCIGDLETETQTILIEHNLVIRNFTDAQLSELAP
LSVQRPWKVDLEEVKKRRDLRSPTISGNPDSEDILIFSIDPPGCQDVDDALSVQWLPPIV
DEYGKEHKRLQLGVHIADVSYFVPSGSYIDSEARRRSTSIYLADRRYDMLPGLLSGDLCS
LWSGRDRYAVSVLWEIDMDSFDISNIWYGRTVIHSSYKLTYELAQRIYDSVTADNISSNS
CAVEEFIKNKSILLLVDIASNVRERRLAKGGLELESVEVSVQFANPETRTGKLEDLIPKE
PLEMHNTVAELMIFANHWVARRCVEYYPDRACLRRHPPPRPEYFDELKRCIACRGFVLDT
SSNLSLANSLKNASDPNDPEVNKVVRQLVTRTMTNALYFSTGSSNMTQDQFSHYGLALNL
YTHFTSPIRRYADIIVHRLLLASLGDFRSLTTTQSELNSKNTELVTILENNTDGLFSSEE
LASICNHMNEQHWAAQQVQRSSLELFQALFFKDKAVDDPSRYTEGIICQLRGTNGFIAFV
PRSIERVYSSERSDCGVLEIRNSKTNECQQYRMFDHVLLKINVSESVAHGLNIRLELVGL
PKTNYSKGKLVTANITTENHSVCTPSLNTNLIKDVQDIDAERRQKREVSDLEHVDVSKRK
HLIAQLHDRSSLYHRFHKLLRQSNEDEMETN
NT seq
2976 nt
NT seq
+upstream
nt +downstream
nt
atgaattgggttgctgctaactggtacataaatcacttgaaaggccacgtttcactagtt
ttcgtaacagataacgagaattatgtccacacttattcatctgaaacaaacaccacatct
tgtaaattaactgtcttggatttaccagggtttttacagatgtactaccccacgctcaca
accgccaaacttttgtttgattctttggatgtatcacttcgttctattcaatccaaagac
cacaatttaccagagctctcaaaatcagaaaacccttcagagtctttggactcgtacatc
atgccttcagtgccttctgtcggtcacatatatccagagtatttacctgaatcggcttta
gctgccggtttacgatctggacaatttttgaagggtattctccacgtgtcgcgttttcga
ccgactactgaggctatggtagccttaacagatgcagtaaagcaccaaccagaacttaaa
gaagcgttggcagcacggagtgagattatgattcacgggctacaacatcgtaatcgtgct
gttgatggagatgtagtcgtagtacgtcttttaccccgcgttcattggaaaactgtttca
tccgatattagtgctcaagaaaactgtgcagctgaatttgtaaatgatttatcaaatatg
tccggaagtaaacctaatgaggattgttttaagtcagaaacaatatcacgaagtctacct
tgtggctttgttgttggtgttatcagtcataattggcgtgattatgtctgtacatatgtt
cctaaatctactgaaaattcattagattcaaaaagtgaaagtggatggataatagttact
ccatgggatcgtcgtattcctctcattcgactgcatactacacaaatttccaagttaacc
cgtgaacgttttatagtacgaatcgatacatgggactcgtattcagcttatccaagtggt
cattttgttcaaactctaggatgtattggcgatttggaaacagaaacacaaaccatacta
attgaacataatttagttattcgaaattttactgatgcacagttgagtgaattagcacca
ctaagtgtccaacgcccttggaaagttgatctggaagaagtaaagaaacgtcgagatctt
cggtcgcccactatttcaggaaatccagactccgaagatatacttatcttcagtattgat
cctccaggatgtcaagatgtagatgatgctctgtccgttcaatggttaccacctatcgtc
gatgaatatgggaaagaacataaacgtttgcagctgggagtacacatagctgatgttagt
tatttcgttccgtctggtagttatattgatagtgaagctcgaagacgttcaaccagtatt
tatttagctgatcgtcggtatgacatgttaccgggtttgttaagcggagacttatgctct
ctatggagcgggcgtgatcgctatgctgttagcgtattatgggaaatagatatggattca
ttcgatatctcaaatatatggtatggtcgtacggtaatccattcaagctataagttaacc
tatgaacttgctcaacgcatatatgactcagtcactgcagataacatatcatcgaatagc
tgtgcagtggaagagtttattaagaataaatctatattattattggttgatattgcctct
aatgttcgtgaacgtcgacttgccaaaggaggtttagaacttgaaagtgtagaagttagt
gttcagtttgctaatcctgaaacacgtactggaaaactagaggacttgattccaaaagag
ccccttgaaatgcacaatacagttgcggagctaatgatatttgcaaaccattgggttgca
cgtcgatgtgtagaatattatcctgatcgcgcttgtctacgtcgacatccacctccgcgt
ccggaatatttcgatgaacttaaacgctgtatagcttgtcgaggcttcgttttagacaca
agttccaatctttcattagcgaattccttaaaaaatgcatcagatcctaatgatcctgag
gttaacaaggtggtacgtcaacttgttacacgtacaatgacaaatgcactatatttctca
acgggttcatcaaatatgacacaagatcagttttcccattatggtttagcccttaatttg
tatacacatttcacatcacccatacgacgttacgctgatataattgttcatcgtcttctg
cttgcttcattaggagacttcaggtcactgacaacaacacaaagtgaactcaactcgaaa
aatactgagttagtcacaattttagaaaataatactgatgggttattttcttctgaagaa
ttagcttctatttgcaatcatatgaacgaacaacactgggctgctcaacaagttcaacga
tccagtttagaattatttcaagctttgttctttaaagataaagcagttgatgatccatct
cgatatactgaaggaatcatttgtcagttgagaggcaccaatggatttattgcctttgtt
ccccggtcaattgaacgtgtttattcatctgaacgatcagattgtggggttttagaaatc
cggaactccaaaactaatgaatgtcaacagtatcgtatgttcgatcatgtcttattaaaa
attaatgtcagtgagagtgttgctcatggactaaatatacgattggaacttgtgggtctt
ccaaaaacaaattattctaaaggtaaactagtaacggcaaatataacaacagaaaatcat
tcagtctgtacaccgagcttgaataccaatttgataaaggatgtacaagatatagatgct
gaaagacgtcaaaaacgcgaagtgagtgatctggagcatgttgatgtttcaaagcgcaag
cacttgattgctcagttacatgatcgttcttcactatatcaccgatttcataaacttcta
cgtcagtctaatgaagatgagatggaaactaactga
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