KEGG   Schistosoma mansoni: Smp_167150
Entry
Smp_167150        CDS       T01095                                 
Name
(RefSeq) putative wd-repeat protein
  KO
K10599  pre-mRNA-processing factor 19 [EC:2.3.2.27]
Organism
smm  Schistosoma mansoni
Pathway
smm03040  Spliceosome
smm04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:smm00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    Smp_167150
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    Smp_167150
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:smm03041]
    Smp_167150
   04121 Ubiquitin system [BR:smm04121]
    Smp_167150
   03400 DNA repair and recombination proteins [BR:smm03400]
    Smp_167150
Enzymes [BR:smm01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     Smp_167150
Spliceosome [BR:smm03041]
 Complex B
  Other components
   Prp19 complex
    Smp_167150
 Complex C
   Prp19-CDC5 complex
    Smp_167150
Ubiquitin system [BR:smm04121]
 Ubiquitin ligases (E3)
  U-box type E3
   Smp_167150
DNA repair and recombination proteins [BR:smm03400]
 Eukaryotic type
  Other factors with a suspected DNA repair function
   PSO4 complex
    Smp_167150
SSDB
Motif
Pfam: WD40_Prp19 WD40 WD40_WDHD1_1st WDR55 WD40_CDC20-Fz Beta-prop_EML_2 Beta-prop_WDR90_POC16_2nd Beta-prop_CAF1B_HIR1 EIF3I Beta-prop_TEP1_2nd WD40_MABP1-WDR62_2nd Beta-prop_EML Beta-prop_WDR75_1st ANAPC4_WD40 Beta-prop_EIPR1 WD40_MABP1-WDR62_1st NBCH_WD40 Beta-prop_TEP1_C Beta-prop_WDR19_1st Beta-prop_IFT140_1st WDR90_beta-prop_4th Beta-prop_SCAP Beta-prop_Vps41 Beta-prop_RIG_2nd WD40_like Beta-prop_HPS5 WD40_RFWD3 Beta-prop_IFT122_1st eIF2A Beta-prop_DCAF4 Beta-prop_Nup120_160 PEP5_VPS11_N Beta-prop_SPT8 Beta-prop_DCAF12 Beta-prop_WDR35_TULP_N Ge1_WD40 Beta-prop_IP5PC_F Beta-prop_WDR11_1st Beta-prop_VPS8 Cytochrom_D1 WD_LRWD1 KNTC1_N
Other DBs
NCBI-GeneID: 8352147
NCBI-ProteinID: XP_018648795
LinkDB
Position
1:complement(39503397..39509087)
AA seq 389 aa
MNVQNINTTHQPPAGTAPTVPQSSDTSDNSSTVDSNQLQEETGISEDVINTLQERASQLT
AERKRRGKTVPEGLARSRAISEYQQLANHVGLHSASMPGINCLDISKTSPERIVTGGNDK
TAVVFDLSTSQVISILKGHNKKVTQVVYHPSEELVFTGSPDTTLRVWGVEQGQCASIIRA
HKGSVTGLSIHATGDYLLSCSSDGQWAFSDLRHGRVLVRISAVDKSGSIQALTCAQFHPD
GLILGTGTADGEVKIWDVKERRNVANFAHGSGTNQPVTAVAFSENGYYLATSGGDSQVKL
WDLRKLKNFKTLIPGEDQPSYEICDMEFDQSGSYLAVAGTDVRVYLCKQWDQLISFNAHT
APATGVRFGENATTVISASRDRSVKVFGT
NT seq 1170 nt   +upstreamnt  +downstreamnt
atgaatgttcaaaatattaacacaactcatcaacctcctgctggcacagctccaactgtt
cctcaatcctcagacacaagtgacaactcaagtactgtagattcaaaccagctacaagaa
gagactggtataagcgaagacgttatcaacactttacaagaacgagctagtcagcttaca
gcagagcgaaaacgacgtggaaaaacagtacccgaaggattggctagatcgcgagctatt
tctgaataccagcagctggctaatcatgtaggccttcattccgctagcatgcctgggatt
aattgtcttgacatcagcaagacatctcctgagaggattgtaacagggggtaatgacaaa
actgctgttgtatttgatctttctacgtcacaagtcatatccattctcaaaggacataac
aaaaaggttacacaggttgtttatcatccatctgaagaattagtgttcacaggttcgcct
gacacaacgctaagagtatggggtgtcgaacaaggtcaatgtgcaagtataattcgtgcg
cacaagggatctgtaactggtttaagtattcatgcaactggagattatttgctttcgtgc
agctcagatggtcaatgggcattcagtgatttgcgacatggacgcgttttggttagaatt
tccgccgtcgataaatctggcagtattcaggcacttacttgcgcccagtttcatccggac
ggtcttattcttgggaccggtactgctgatggggaggtaaaaatctgggatgttaaggaa
cggcgcaatgtcgcaaatttcgcacatggttcaggtactaatcaaccagttacagctgtc
gctttttcggaaaacggatattatctggctacaagtggtggtgatagtcaagtgaagctc
tgggatctgcggaaattaaagaactttaaaactttgattcctggtgaagatcagccatct
tacgaaatatgcgatatggaattcgaccagtctggttcataccttgctgttgctggtact
gatgtacgtgtgtatttgtgtaaacagtgggatcagttaatttcgttcaatgcacatacg
gctccagcaactggagttcgctttggtgagaatgcaactacggttatttcagccagtcgt
gatcgttcagtaaaagtattcggtacataa

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