Schistosoma mansoni: Smp_170340
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Entry
Smp_170340 CDS
T01095
Name
(RefSeq) putative collagen alpha-1(V) chain precursor
KO
K06237
collagen type IV alpha
Organism
smm
Schistosoma mansoni
Pathway
smm04512
ECM-receptor interaction
smm04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
smm00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
Smp_170340
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
Smp_170340
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
smm04147
]
Smp_170340
00536 Glycosaminoglycan binding proteins [BR:
smm00536
]
Smp_170340
Exosome [BR:
smm04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
Smp_170340
Glycosaminoglycan binding proteins [BR:
smm00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
Smp_170340
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
8351429
NCBI-ProteinID:
XP_018648995
UniProt:
G4V8A8
LinkDB
All DBs
Position
1:45960783..46001428
Genome browser
AA seq
1780 aa
AA seq
DB search
MKPHDNYQFTNKYNTYGFILISIFILSNICIIYTNGAATCIPSPNCTECTCMGIPGPKGD
VGARGHVGRPGPVGQRGLPGPPGPEGERGIPGIPGDPGPKGIMGDKGVLGVPGVDGLKGA
VGIKGPKGFPGEEGCCGAKGPKGLKGTQGSYGFDGLAGERGLKGPKGDKGEPAVVDGIDG
VGETGPKGEKGELGPKGIRGRDGAKGQPGMAGPKGYQGLKGDRGEPGLKGEKGDTPSPIS
LPYAEPGEKGFKGEKGTSYDESALFKGQRTGVKGIKGLPGPRGDPGDEGPTGPRGSPGIN
GVPGTPGPIGDEGTMGKFGKPGAPGIPGPPGRLGQDGLPGPPGPAGFPGPKGDKGYSGTQ
GPKGEKGVKGETTDVDAMPGPDGDIGEPGVKGDRGDPGPYGPRGLPGGRGPRGDPGPKGD
PGPGYAQVIIGEPGRKGEKGLPGLDGKRGKTGRPGIPGTKGEKGFPGREVYGRKGEKGSR
GFPGPIGPPGDRGASGIPGPIGDQGEIGPSIDGPPGPKGVKGQPGLPGIRGREGDPGPAG
EKGDCIVCPDGRPGLQGPKGFRGQPGIPGEPGLDGSPGQKGLPGAQGRDGLVGVPGQKGE
KGERGNDGSRGPKGEPGPVEIVNVTVPEAPRGDVGRPGRAGVVGEQGPKGFPGPKGLPGP
EGPKGDSGQPGLPGFSGTVGKPGRRGEPGRDGIVFDAQKGASGIPGRDGIKGEKGEKGDR
GMDNIVDQIFEYIKGETGPKGYPGDKGLSGFPGEKGREGEKGIAGIPGKQGKPGFPGLQG
AAGERGDKGFMGPKGPRGIPGPSGEPGRKGIKGLLGPKGLPGPAGDIGERGPSGLPGFSA
TGEKGEEGTQGFPGPPGRKGIPGIKGEKGVRGADGLPGLNGPKGEIGDRGPKGEIGEPGE
VYQGMKGPKGIKGETGLPGVDGPKGDPGEDRFPTIAMKGLPGPSGPRGPEGPKGLPGNTG
LPGRVGPSGPSGAPGSPGEKGDAGQPGTFGPKGLPGEPGDDGVEGPRGETGDEGPRGLPG
SLGPKGLPGLMGPKGLPGEPGGIGVGVKGQKGLPGLKGIKGFPGEPGDDGIPGNKGLPGL
AGVAEKGEKGEKGLKGAQGLPGIKGRPGQMGPLGEIGDPGPTGLIGEKGDHGVPGPAGRP
GRNGIAGEPGDLGPRGLPGLPGPLGDKGEKGSRGTTDRLADVGPKGEKGQPGIVGPPGPK
GLQGPKGGQGIQGISGKDGLPGQPGPMGPKGEKGVPGPPGPRGTEGQPGLKGPKGFVGPK
GFPGSVGPPGERGPTGDRGELLRSPVGPKGERGLLGPPGAVGRKGEPGEPGARGAPGEVG
EPGPDLFGAPGEKGSPGPTGRPGVPGMRGPKGVKGVSPREPGEPGQRGADGPPGIKGERG
PKGFDGSIGRKGLPGLKGEQGAKGFPGKTGRPGEVGEKGDRGPTGLPGDKGSKGIKGEIG
RPGLQGPKGDTAISVLGIKGEKGIRGDDGFMGPKGLPGIDGSPGAPGPRGEPGDVGEPSP
VGPKGYPGPTGEKGFMGPEGPKGDVGPVGEQGAPGGIGDTRGNTGHLFTVHSQTARIPSC
PSSTRKLWDGYSFLSMTGSDRAHVNDLASPGSCLQLFNPIPFMFCEKQENCYYAQRNDRS
YWLSTEEEPMMWNPVPANETQRYISRCAVCEASSKLYAFHSQTLKIPKCPDGWSTLWPGS
SFFMNTGYGAQGGGQQLASPGSCLPQFRSHMFIECTAKGLCGFFEEHKNFWLRVMPSSMD
EHMFGMVMGTVIKVRNSQDSVGKCAVCMRTQPLSTLFYLN
NT seq
5343 nt
NT seq
+upstream
nt +downstream
nt
atgaagcctcatgataactatcaatttacaaataagtataatacgtatggatttattctc
atatctatttttatattatcgaatatatgcataatatatacaaatggagcagcgacgtgc
ataccatcgccgaattgcacagaatgcacttgtatgggaattccggggccaaagggtgac
gttggtgctcgtggacatgttggtagaccaggtcctgttggacaacgtggattgcctggt
ccacctggtccagaaggtgaacggggtatacctggtataccaggtgatcctggacccaaa
ggaattatgggtgataaaggtgttttgggtgtacctggtgttgatggtcttaaaggtgca
gttggtattaaaggtccgaaaggttttccaggtgaagaaggctgttgtggtgctaaaggg
cctaaaggtttgaaaggtactcagggtagttatggattcgatggacttgctggtgaaaga
ggtttaaaaggtccaaagggtgataaaggggaaccagctgttgttgatggcatcgatggt
gtgggagaaactggacccaaaggtgagaaaggtgaacttggtccgaaaggtattcgtggc
cgagatggagctaaaggacaacctggtatggctggtccaaaaggttatcaaggattaaaa
ggagaccgtggtgaaccaggtttaaagggtgaaaaaggggatactccctcaccaatttct
ctgccatacgcagagccgggtgagaaaggattcaaaggtgaaaaagggacatcttacgat
gaatcagctttatttaaaggacagagaactggggttaagggtataaaagggcttcctggc
cctcgcggtgatccaggtgatgaaggtcctacaggtccacgaggcagtccaggaataaat
ggtgtgcccggaactccaggtcccattggtgatgaaggtacaatggggaaattcggaaag
cctggtgcacctggtatacctggaccacctggaagattaggccaagacggtctacctgga
cctcctggaccagctggttttcctggacctaaaggcgacaaaggatattcagggactcag
ggacccaaaggtgaaaagggtgtaaaaggtgaaacaactgatgtggatgcaatgcctggg
ccagatggagacattggtgaaccaggagtgaaaggggatcgtggtgatccaggcccttat
ggaccaagaggcttacctggtggacgtggaccacgaggagaccctggacctaagggtgat
ccaggtcctggatatgcacaagttattataggtgaaccaggaaggaaaggagaaaaaggt
ctgccaggattagatggaaaacgtggaaagacaggacgacctggaattcctggaacgaaa
ggagaaaaaggtttccctggtcgagaggtatatggaaggaaaggtgaaaaaggttcacgt
ggatttccaggacccattggaccacctggtgatcgaggagcttcaggtataccaggtcct
attggtgaccagggggaaataggtcctagtattgatggtcctcctgggcctaaaggagtt
aaaggtcaacctggtttacctggtatacgtgggcgtgagggtgatcctggtcctgctgga
gaaaaaggggattgcattgtgtgcccagacggaagacctggtttacaaggaccgaaaggt
ttccgaggtcaacctggaatccctggtgaaccaggcttggatggctcaccaggacaaaag
ggattacctggagcccaaggacgagatggtcttgttggggtgcctggtcaaaagggtgag
aaaggtgaacgtggaaatgatggttcacgtggacccaaaggcgaaccgggtcctgttgaa
atagtaaatgtcactgtaccagaagcaccacgtggcgatgttggtcgtcctggtcgtgcc
ggagtagtcggtgaacaaggtccgaaaggttttcctggtcctaaaggcttacctgggcca
gaaggtcctaagggcgacagtggacagccagggttaccaggtttcagtggaacagtagga
aaacctggaagacgtggtgaaccaggtcgtgatggaattgtattcgatgcacaaaaagga
gcttcgggtattcctggcagagatggcattaagggtgaaaaaggagaaaaaggagacaga
ggaatggataatattgttgatcaaatattcgagtatatcaaaggtgaaaccggtccgaaa
ggatacccaggagacaaaggattatcaggattcccaggagaaaaaggcagagaaggtgag
aaaggaattgctggaatacctggaaaacaggggaaaccaggttttcctggtctacaagga
gctgcaggtgaacggggagacaaaggttttatgggccccaaaggaccgagaggtattcca
ggtccatcaggagaaccaggaagaaagggaataaaaggtctacttggcccaaaaggtctt
cctggacctgctggtgacataggtgaacgtggtccatctggtctaccaggtttctcagcg
actggagaaaaaggtgaggaaggtacacaaggattccccggccctccaggtagaaaagga
attccgggtattaaaggtgaaaaaggagttagaggagctgatggactaccaggattaaat
ggtccaaaaggtgaaataggtgatcgaggacctaagggggaaattggggaaccgggcgag
gtttatcagggaatgaaagggccaaaaggtataaaaggtgaaaccggtcttcctggtgtt
gatggccctaaaggagatcctggagaagacagattccctacaattgcaatgaaaggcctt
cctggtccatcagggcctcgtggacctgaaggaccgaaaggtttacctggaaatacagga
ttacctgggagagttggtcctagtggacctagtggagcacctgggtctcctggtgaaaaa
ggtgatgctggccaacctggaacattcggccccaaagggttgcctggagagcctggagat
gatggtgtggaagggccgaggggtgaaactggtgacgaggggccaagaggtcttcctgga
tcactaggacctaaaggattacctggtttaatgggtcctaagggacttccaggagaacca
ggaggaataggagttggagttaaaggacaaaaaggtttaccaggactcaaaggtataaaa
ggtttcccaggtgaaccaggagatgatggaatacctggaaataaaggtcttccaggtcta
gccggagtagccgaaaaaggtgagaaaggtgaaaaaggattaaaaggtgctcaaggacta
cctggaataaagggtagaccaggtcaaatgggtccattaggagagataggtgatcctggt
ccgactggcctcattggtgaaaaaggagatcatggagtgccaggtccagctggtcgtcct
ggtcgaaatggcatagccggcgagcctggcgatttaggaccaagaggactaccggggcta
cctggaccattgggcgataaaggtgaaaagggctcacgcggtacaactgatcgattagct
gatgttggaccaaaaggggaaaaaggtcaacctggtatagtaggtccacctggacctaaa
ggtttacaaggtccgaaaggtggtcaaggaattcaagggatatctggtaaagatggtcta
cccggtcaaccaggacctatgggccctaagggagaaaaaggtgtacccggaccaccagga
ccaagaggaactgaggggcaaccaggtctaaaaggtcccaagggatttgtcggccctaaa
ggatttccaggatcagttggtcctcctggagaacgtggtccaacgggagaccgaggtgaa
ttattaagatccccagtcggaccaaaaggtgaacgtggcttgcttggaccacctggagcc
gtgggtcgcaaaggtgagcccggggaacctggagcgagaggagctccaggtgaagtgggt
gaacccggtccagatttatttggagcacctggagagaaaggaagtcctgggcctacaggt
agacctggggttcctggaatgagaggacctaagggagtcaaaggtgtttcacctcgagaa
cctggtgaacctggccaaagaggtgctgatggacccccaggtatcaaaggagaacgtggt
cccaaagggtttgatgggtcaattggtagaaaaggattaccaggtttaaaaggtgagcaa
ggtgctaaaggattcccagggaaaacaggtagaccaggtgaagtcggcgagaaaggtgac
agaggacctacaggacttccgggagataaaggtagtaaaggaataaaaggtgaaataggc
cgaccgggattacaaggtcctaaaggagatactgcgatctctgttttgggaataaaaggc
gaaaaagggatacgaggagatgatggtttcatgggtcccaaaggtttaccaggaatcgat
ggatcccctggagctcctggtccaagaggtgaacctggagatgttggagaaccatcacca
gtaggtccgaaaggttacccaggtcccacgggtgagaagggatttatgggtccagaagga
ccaaaaggtgatgttggtccagttggagaacaaggagctccaggaggcattggcgacaca
cgtggtaacacaggacacttattcactgttcatagtcagactgcacgcatcccgtcatgt
ccgtcatcaactcgtaaattatgggatggttattcatttttaagtatgactggatcggat
cgagctcatgttaacgatctagctagtcctggttcatgtctacaattatttaatccaata
ccgtttatgttttgtgaaaaacaagaaaattgttattatgctcaacgaaatgatcgaagc
tattggctgagtacagaagaagaaccaatgatgtggaatccagttccagcaaatgaaact
caaagatatataagtagatgtgcagtttgtgaagcttccagtaaactttatgctttccat
tcgcaaactttgaagattcctaaatgtcctgatggttggtccactctgtggccgggaagt
agtttctttatgaatactggttatggagcacaaggtggaggacaacagctagcatctcca
ggtagttgtttaccacagttccgatctcatatgtttattgaatgtactgctaaaggttta
tgtggattttttgaagaacataaaaatttctggttacgtgttatgcctagttctatggat
gagcatatgtttggcatggtaatgggcactgtaatcaaagtacgtaatagtcaagattca
gttggtaaatgcgctgtatgtatgagaacacaaccattgtcaacattattttatttaaat
taa
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