Schistosoma mansoni: Smp_175430
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Entry
Smp_175430 CDS
T01095
Name
(RefSeq) putative dna repair protein xp-E
KO
K10610
DNA damage-binding protein 1
Organism
smm
Schistosoma mansoni
Pathway
smm03420
Nucleotide excision repair
smm04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
smm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
Smp_175430
09124 Replication and repair
03420 Nucleotide excision repair
Smp_175430
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
smm04121
]
Smp_175430
03400 DNA repair and recombination proteins [BR:
smm03400
]
Smp_175430
Ubiquitin system [BR:
smm04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Adoptor protein
Smp_175430
DNA repair and recombination proteins [BR:
smm03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Cul4-DDB2 complex
Smp_175430
TCR (transcription coupled repair) factors
Cul4-CSA complex
Smp_175430
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_2nd
CPSF_A
Beta-prop_RSE1_1st
Motif
Other DBs
NCBI-GeneID:
8344589
NCBI-ProteinID:
XP_018652307
LinkDB
All DBs
Position
4:complement(23063353..23088076)
Genome browser
AA seq
1329 aa
AA seq
DB search
MAHFYHVTTQRPTAVVKTCTGHFTSPNDLNLLICKNTYVEVFEVTCEGLKLVRDVPINAK
IVAASLFRRKDRETDSLFLLTHKAGVAIIECVRNNDSVEFVTVASGSVEDRSARIIDQGF
DVLIDPGANYIVVRLYHGLLKIILLQCIGEKIGTDFLDTNQIEEGNIVDMAFIYGYSLPT
FAMIYEDELVLHMKTYEIYGREPVLRNVQLTLDSIEPDSKLLIPVPKPYGGVILVGDNII
CYHTKDGPHISQYIPQAKASQVLCYAAVDAQRYLLGDMAGRLYMVHLLSEDISAAANNGT
SNSDSLSAVRIGSIRIELLGETATPESIAYLDNGVVFIGSTLGDSQLIRLNPDPDPERNS
YITILETYTNIGPIVDMVLLETKGQNQLITCSGAYKEGSLRVIRNGIGIHEHATIDQDLI
KGAWCFPIESDRFDDTIVVSMVGQTQLLHLADDDITALHLEGFKTDEQTVYCATLSPAND
SPRPESMMIDENNNTLDPLLLQATTSGLRLIGIQSLCSKGCLTEWKPPTGRGISCLSSFR
HTIVVASGTELYVLKVVGESNNPKFEQVSHRQMSHEVACIDLTPFNRDRAIAAINAVSSN
HLDSTSSSTPDKSVPYLVAVGLWLGHGLALLKLPNLELVHEEPLPETTASTGTALLPRSV
LIAQLEDIAYLFAAMGDGTLYFYTIDPSEDHVCLRDPKRVSAGTGPSMFLRQWRSQRKVN
VFVCSNHPCVIYSIKNKLIFANLNLKEVNFMTPLNGLFYSDCIALVTPTALIIGSVDEIQ
KLHVRTLPLEETPKRLALQSETSSLGVITYRQEMFQEGMGFKPVRSSISLSQKIPKSASR
LPKTAPSSVSATERKFREIEVSSLLIFNQSNLEIQFAHNFYFSQTLVEVAVSIASVQSDI
HNGPLFAVGTAFLVEDEVEPSKGRIHLFRWDPESSRLDTVLVHDVNGSVYRIVDFNGRLL
AAINSSVRLFDIKEDSLRLACSFNENIIVLFLRRKGDFVLVGDLMRSLTLLLFKSNVNNF
EAIGRHRHPRWTTCIEILDDEHFLAAEVENNLFVVSRDLPENTKEPSFRALLSSSSDSCV
LPSLSNQLQSNNASSSKTTGLSTQPDNTTNDNIAASSTSSNTTSMSSISSAAEGRSSSTQ
STRHFLDSRLTGSKPNSSGVSGEMQRLVDCAYFHTGDFVNVFVRGNLVLQNAEERWTAVG
YPGHLYGTVNGGLGLLVQVSPVLFAFLKEVEFRLSNLVVPVGGFSHDTWRAFKADREIKM
AHNFVDGDLIETVTDLSMDDKAKLVKGLRIPVNMNEFGTAGSTCTTDPETRECTVEDLVK
VVEEMSRLH
NT seq
3990 nt
NT seq
+upstream
nt +downstream
nt
atggcgcatttttaccacgtgactacccagcgtcctactgctgtggtaaaaacgtgtaca
ggccattttactagtccaaatgatctcaatttactgatatgcaaaaacacatatgttgaa
gtttttgaagttacatgtgaaggcttgaaattggttcgagatgtgcctattaatgctaaa
atcgttgctgctagtctgtttagacgaaaagatcgtgaaacagactcgttatttttactc
actcacaaagctggcgtcgctatcattgagtgtgtacgaaacaacgattcagtggagttt
gtcactgtcgcctctggaagtgtagaagatagaagtgcacgaataatcgaccagggtttc
gacgttttaatcgaccctggtgccaactatattgttgtgcgactatatcatgggctttta
aaaattatattacttcagtgtattggcgaaaaaataggcactgattttctagatacaaat
caaattgaggagggtaacattgttgatatggccttcatatatggctatagtttaccaaca
tttgctatgatttatgaagatgagcttgtgttgcatatgaagacttatgaaatatatgga
cgggagcccgtacttcgcaatgttcaactgaccttagattctatagaaccggattctaaa
cttcttattccagttccgaaaccttatggaggcgttattttagtcggcgacaatattata
tgttatcataccaaagatggaccccatatatctcaatacattccacaagcaaaggccagc
caagtattgtgttacgctgctgtcgatgcacaacgttatttgctaggtgatatggctgga
cgcttgtacatggtacatttactctccgaagatatttctgcggccgcgaacaatggtaca
agtaactctgatagtctttcagcagttcgaattggttctatccgaattgaacttcttgga
gaaactgcgacacctgaatctatagcctacctagacaatggagttgtgtttattggctca
acacttggggactcacagctaattcgtttaaatcctgacccagatcctgagcgtaatagc
tatataactattttagaaacatatacaaatattggaccgatagttgacatggtcttatta
gaaacaaaaggtcagaatcagttgatcacttgctcaggagcttataaagaaggaagtcta
cgtgttatacgcaatggaattggaattcacgaacatgctactattgatcaagatctaatt
aaaggtgcttggtgcttccccattgaatcggatcgtttcgatgatacaattgtagtatct
atggttggtcagacccaacttcttcaccttgccgatgatgatattacagctctacacttg
gaaggttttaagactgatgaacaaactgtttattgtgccacactatcacctgctaatgat
tcacctaggccagaatctatgatgattgacgagaataataatacgttagatcctttactg
ttacaagcaacaacaagtggcttacgcctaattggtattcagtcactttgtagcaaaggt
tgtttaacagaatggaaaccaccaactggacgtggaatctcttgtcttagctcatttcgt
catactattgttgtagcaagtggaacagaattgtatgttttaaaagtagttggagaatcg
aataatccaaaatttgaacaagtttcacatagacaaatgtctcatgaagtggcttgtatt
gatctaactccctttaatcgtgatcgtgcaatcgcagctattaatgcagtttcatcaaat
catctagattcaacttcatcttctactcctgataaatctgtaccatatttagttgcagtc
ggtttatggttaggacatggtctcgctttacttaaacttcctaatttagaacttgtccat
gaagaacccttaccggagacaacagcatcaactggcacagctctattaccacgttctgta
ttgattgctcagttggaggatatagcttatttgtttgctgcaatgggtgatggtactctt
tacttttatacaattgatccttcagaagatcatgtttgtttacgtgatcccaagcgtgtc
agtgcaggcactggaccttcaatgtttcttagacaatggcgttcacaacgtaaagtgaac
gtatttgtttgctcaaatcatccttgtgtaatatattcaattaaaaataaattaatattt
gccaatttgaacttgaaagaagtgaattttatgactccattaaatggattattttatagt
gactgcattgcactggttactccaacagcactcatcattggatcagtggatgaaattcaa
aaactccacgtaagaactctgcctttagaggaaacaccgaaacgtcttgcattacagtca
gaaaccagcagcttaggtgttattacatatcgtcaagaaatgtttcaagaaggtatggga
ttcaaacctgttcgttcatcgatatctctatcacaaaaaattcccaaatcagctagccga
cttccaaagactgcaccatcttctgtctctgctactgaacgaaagttccgtgaaattgaa
gtttcatctctgcttatattcaatcaatctaatttggaaattcaatttgcacataatttt
tacttcagtcaaacactagttgaagtagctgtcagtatagcttctgttcaatctgatatt
cataatggaccattgtttgctgtaggcactgctttccttgtagaagatgaagttgaacca
tctaaaggacgaattcatttattccgttgggatcctgaatcttctagattggacacagtt
ctagtacatgatgtaaatggttctgtttatcgaatagtggattttaatggtcgtctacta
gctgctatcaatagttcagtacgactttttgatattaaagaagattctttacgattagct
tgtagtttcaatgagaatatcatcgtactttttcttcgtcgtaaaggtgattttgttctt
gtcggtgatttaatgcgttcattaacattgttactattcaaatcaaatgtgaataacttt
gaagctattggacgacatcgtcatcctcgttggacaacatgtattgaaatccttgatgat
gaacattttcttgctgcagaagtagaaaataatcttttcgtcgtttcaagggatctacca
gaaaatactaaagaaccaagttttcgtgctttattatcatcatcgagtgactcatgcgtt
ttaccatcattatccaatcaactacaatccaataatgcttcatcatcaaagaccaccgga
ttatcaactcaacctgataatactaccaatgataatatcgctgcctccagcactagttct
aatacaacttccatgagttcaatatcatcagcagcagagggtcgaagtagtagtacacaa
tcaactcgtcatttccttgattctcgtctaactggcagtaaaccgaattctagtggtgta
tctggtgaaatgcaacgtctagttgattgtgcttattttcatacaggagattttgtcaat
gtatttgtacgtggtaatcttgtgcttcagaatgctgaagaacgttggactgctgttggt
tatcctggtcacctttacggtactgttaacgggggtttagggcttcttgttcaagtttct
ccagttttatttgcgtttttgaaagaagtcgagtttcgtttatcaaatctagttgtacct
gttggtggattttcacatgatacatggagagcttttaaagctgatcgcgaaattaagatg
gcgcataatttcgtagatggtgatctcattgaaacagttacagatttaagcatggacgac
aaggctaaattagtcaaaggtttacgaataccggtaaacatgaatgaattcggaactgct
ggttcaacgtgtactactgatcctgaaacacgagagtgtactgtggaagatttagtcaaa
gttgtcgaagaaatgtcacgtcttcattag
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integrated database retrieval system
