Schistosoma mansoni: Smp_175550
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Entry
Smp_175550 CDS
T01095
Name
(RefSeq) putative lsm1
KO
K12627
U6 snRNA-associated Sm-like protein LSm8
Organism
smm
Schistosoma mansoni
Pathway
smm03018
RNA degradation
smm03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
smm00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
Smp_175550
09123 Folding, sorting and degradation
03018 RNA degradation
Smp_175550
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smm03019
]
Smp_175550
03041 Spliceosome [BR:
smm03041
]
Smp_175550
Messenger RNA biogenesis [BR:
smm03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
Smp_175550
mRNA degradation factors
5'-3' decay
Lsm complex
Smp_175550
Spliceosome [BR:
smm03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
Smp_175550
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
Motif
Other DBs
NCBI-GeneID:
8344614
NCBI-ProteinID:
XP_018650399
LinkDB
All DBs
Position
2:complement(<24085959..>24086282)
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AA seq
72 aa
AA seq
DB search
GTLKGFDNVVNLVIKDSHERVFSPTEGVEQVPLGLFIIRGQNVAVVGELDEDLDRRIDFS
QLRAEPLNPVVH
NT seq
219 nt
NT seq
+upstream
nt +downstream
nt
ggtacattaaaaggatttgataatgttgtcaatcttgttatcaaagatagccatgaacga
gttttcagtccaactgaaggtgttgaacaagttccattgggtttatttattattcgagga
cagaatgtggctgtagtcggagaacttgatgaagatctagataggcgaattgatttttca
caacttcgtgctgaacctcttaatcctgttgtacattaa
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