Schistosoma mansoni: Smp_179010
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Entry
Smp_179010 CDS
T01095
Name
(RefSeq) putative exosome complex exonuclease rrp42 (ribosomal rna processing protein 42)
KO
K12589
exosome complex component RRP42
Organism
smm
Schistosoma mansoni
Pathway
smm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
smm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Smp_179010
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smm03019
]
Smp_179010
Messenger RNA biogenesis [BR:
smm03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
Smp_179010
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
Smp_179010
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-GeneID:
8346380
NCBI-ProteinID:
XP_018650544
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All DBs
Position
2:complement(29300183..29302391)
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AA seq
254 aa
AA seq
DB search
MDGRGPSEYRPLEIETNILSHATGSASIRIGETFIVCCVKMEVGKPSLTNTSEGRIEINV
ECYPTATHRCNEKAASELEERLKTTLQSAYQLKFIDLSPLCIQRGRQCWVIYIDLLILEG
AGNLLDASSLVVKAALLNATQLNSLLLSVFQNNSESLEAGVQQFHGDMLPLFITVHKIGK
AYLIDASKEEEACSLSRLSLVIYPDGSIGSLEQDGCCSCQLESIVEMSQLASIVGKKLNH
ALVKTLELERQLRS
NT seq
765 nt
NT seq
+upstream
nt +downstream
nt
atggatggtcgtgggccaagtgaatatcgacctttagaaatcgaaactaatattttgagt
catgcaactggttcagctagtattcgtattggtgaaactttcatcgtttgctgtgttaaa
atggaggttggcaaaccttctttaactaacactagtgaaggtcgtattgaaataaatgtt
gagtgttaccctacggcaactcaccgctgtaacgaaaaggcagcatccgaactggaggaa
cgtttgaagacaacattgcaatcagcctatcaattgaagtttatagatctaagccctctg
tgtatccaacgtggtcgacagtgctgggtcatctatattgatctgcttattttagagggt
gctggaaacttacttgatgcttcctccttggtagtcaaagctgctctactaaacgctaca
cagttaaattctttattattgtctgtttttcaaaacaattcagagtcactagaagcagga
gttcaacagtttcatggagatatgttgccgttatttatcacagtacataagattgggaaa
gcatatctcatagatgcaagcaaggaggaagaagcctgttcattatccaggttatctctt
gttatctatccagatggttcaattggttcattagaacaagatgggtgttgtagttgtcaa
ttagaatcaattgttgaaatgtcacagttagcatcaattgttggcaagaaattgaatcac
gccttagtaaagacactagaattggaaagacagctacgttcttaa
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