Schistosoma mansoni: Smp_198380
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Entry
Smp_198380 CDS
T01095
Name
(RefSeq) putative eukaryotic translation initiation factor 2c
KO
K11593
eukaryotic translation initiation factor 2C
Organism
smm
Schistosoma mansoni
Brite
KEGG Orthology (KO) [BR:
smm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smm03019
]
Smp_198380
03036 Chromosome and associated proteins [BR:
smm03036
]
Smp_198380
Messenger RNA biogenesis [BR:
smm03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
Smp_198380
Chromosome and associated proteins [BR:
smm03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
Smp_198380
RNA interference (RNAi) pathway
RITS (RNA-induced transcriptional silencing) complex
Smp_198380
microRNA pathway
RISC loading complex
Smp_198380
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Piwi
PAZ
ArgoMid
ArgoN
ArgoL1
ArgoL2
Motif
Other DBs
NCBI-GeneID:
29830249
NCBI-ProteinID:
XP_018653609
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Position
7:complement(5784524..5808166)
Genome browser
AA seq
893 aa
AA seq
DB search
MAPKIPGAPYGISNGPTEVVHNVSNGSAANGSGSSPPVVGGVGDAPPLSVGGAGSSAGPG
SNSSGSGGAGGSIGGSGSGHSSASTQHLIQFEPPARPGRGSEGRCISLRANHFEIRMPKG
FLHHYDVSITPEKCPRRVNREIIETMVNSMHYQKYFYNQKPVFDGRRNMYTREPLPISKE
KVELEVTLPGEGKDRVFRVAIKHVSEVSLFALEEALGGHNRHIPNDAVISLDVIMRHLPS
MSYTPVGRSFFQNPDGYENPLGGGREVWFGFHQSVRPSQWRMMLNIDVSATAFYKAQSVI
DFMCEVLDISDKNEQRRPLTDSQRVKFTKEIKGLKVEITHCGTMRRKYRVCNVTRRPSQT
QSFPLQLDTGATVECTVAKYFQERYNIRLDYPHLPCLQVGQEQKHTYLPLEVCNMVAGQR
CIKKLTDMQTSTMIKATARSAPDREKEINNLVKRANFNADPHLQMFGINVNTRMAEIQGR
VIPAPKIQYGGRTKAQASPQLGVWDMRGKQFFSGIEIKVWAIACFAPQRIVREESLRLFT
LQLQKISNDAGMPILGQPCFCKYATGQDQVEPMFRYLKNTHAGLQLIVVVLPGKTPVYAE
VKRVGDIMFGLATQCVQSKNVNKTSPQTLSNLCLKINVKLGGINSIIVPSVRPAVFREPV
IFLGADVTHPPAGDKTKPSIAAVVASMDAHPSRYSATVRVQSHRQEIIHDLYPMVRDLLL
QFYRATRFKPTRIIYYRDGVGEGQFLNVLNHELRAIREACVKLELGYQPGITFIVVQKRH
HTRLFCADKKDQMGKSGNIPAGTTVDQVITHPTEFDFYLCSHAGIQGTSRPSHYHVLWDD
NRFSADDIQNLTYQLCHTYVRCTRSVSIPAPAYYAHLVAFRARYHLVEKEIDR
NT seq
2682 nt
NT seq
+upstream
nt +downstream
nt
atggctcctaaaatacccggggctccgtacgggattagtaatggaccgactgaagttgtc
cataacgtcagtaatgggagtgctgcaaacggtagtggctcctctcctcctgttgtaggt
ggtgttggagacgcacctcctttaagcgttggaggagctggtagtagtgcaggaccagga
agtaatagcagtggctctggtggtgccggtggatctattggagggagcggaagtggacat
tcgtctgcgtctactcaacatcttatacaatttgagccacctgctcgacctggaagaggt
tcagagggtcgttgcatcagtttaagagctaaccacttcgaaataagaatgcctaaagga
tttcttcatcattatgatgtctctatcacacctgaaaaatgtccaagacgcgtgaaccgt
gaaataattgagactatggtcaattcaatgcactatcaaaaatacttttacaatcagaaa
ccagtctttgatggtcgcagaaatatgtatactcgtgagccacttccaatcagtaaagag
aaggttgaactggaagttactctacctggagaaggaaaagaccgagtttttcgtgttgcc
attaaacatgtttcggaagtctctcttttcgccctggaagaagctctcggtggtcataac
cgacatattccaaatgatgctgtcatttcgttggatgttatcatgcgtcatttaccgagc
atgagctacacaccagttggtagatctttctttcaaaatcctgatggatatgaaaatcct
ctcggtgggggtcgagaagtgtggtttggttttcatcagagtgttcgaccttctcaatgg
cgtatgatgctaaatatcgatgtatctgcgactgcattctacaaagcacaatctgttatt
gattttatgtgcgaagtattagatatatcggataagaatgaacaacgtcgaccgttaact
gatagtcagcgagtaaaatttacgaaagaaattaaaggtttaaaagttgaaatcactcat
tgtggtacaatgcgacgtaaatatcgtgtgtgtaatgtgacacgacgaccttctcaaact
caatcattccctttacaattggatactggtgctacagttgaatgtactgttgctaaatac
tttcaagaacgttataatatacgcctggactaccctcatttaccatgccttcaagttggt
caagaacaaaagcacacgtatttaccattagaggtttgtaacatggtagcaggtcagaga
tgtattaaaaagttaactgatatgcagacgtctactatgattaaggctacagctcgttca
gctcccgatcgtgagaaagaaatcaataatctcgtgaagcgagctaatttcaatgctgat
cctcatttacaaatgttcggcattaatgttaacacacgtatggctgaaattcaaggtcga
gtcattccagcaccaaagatccagtatggtggacgcactaaagcccaagcttctccacag
cttggtgtatgggatatgcgaggcaaacaattcttttcaggtattgaaataaaagtttgg
gcaatcgcttgttttgcaccacagcgcatcgttcgtgaagaatcactcagactgtttact
ctacaacttcaaaaaatttccaatgatgctggtatgcccattttaggacaaccttgtttt
tgtaaatatgctactggtcaagatcaagttgaaccaatgtttcgatatttaaaaaatact
catgctggtttacagttgattgtagttgttcttcctgggaaaactcctgtttacgctgag
gtcaagcgcgttggtgatattatgtttggtcttgcaacacaatgtgttcagtcgaaaaat
gtgaataaaacatcacctcagacactctctaatctttgtcttaagatcaatgttaaatta
ggcggtatcaattccattatcgtaccaagcgtccgacctgctgttttccgtgaaccagtt
atctttcttggtgcagatgttacgcaccctccagctggtgataaaactaaaccaagtatt
gctgccgttgttgctagcatggacgcacatccaagccgttattcagctactgtacgtgtt
caatcgcatcgtcaagaaattatacatgatttatatccaatggttagagatttgttactg
caattctatcgagctactcgtttcaaaccaacacgtattatttactatcgagatggtgtt
ggtgaaggccaatttttaaatgttttaaatcatgaactccgtgctattcgtgaagcatgt
gtcaaattagaattaggctatcagcctggtattactttcattgttgtgcaaaagcggcat
catacacgtctattttgtgctgacaaaaaagatcagatgggtaaatctgggaatatacct
gctggaacaacagttgatcaagttattactcacccaacggaattcgatttctatttgtgt
agtcatgcaggtattcaaggcacttcgcgacctagtcattaccatgtattatgggacgac
aatagatttagtgctgatgatatacaaaatctaacttatcaattatgtcatacatatgta
cgttgtactcgttctgtgtcaatccctgctccagcttattatgcacatttagttgcattt
cgagcacgatatcatttagttgagaaagaaatagataggtga
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