Schistosoma mansoni: Smp_204730
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Entry
Smp_204730 CDS
T01095
Name
(RefSeq) unnamed protein product
KO
K10643
CCR4-NOT transcription complex subunit 4 [EC:
2.3.2.27
]
Organism
smm
Schistosoma mansoni
Pathway
smm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
smm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Smp_204730
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
smm03000
]
Smp_204730
03019 Messenger RNA biogenesis [BR:
smm03019
]
Smp_204730
04121 Ubiquitin system [BR:
smm04121
]
Smp_204730
Enzymes [BR:
smm01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
Smp_204730
Transcription factors [BR:
smm03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
Smp_204730
Messenger RNA biogenesis [BR:
smm03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
Smp_204730
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
Smp_204730
Ubiquitin system [BR:
smm04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
Smp_204730
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Torus
Glyco_transf_92
Motif
Other DBs
NCBI-GeneID:
29830743
NCBI-ProteinID:
XP_018644669
LinkDB
All DBs
Position
Unknown
AA seq
711 aa
AA seq
DB search
MRSIRDLNQSTLHGRPIRVSLGTTKYCSQFLRGTKCTKHECMYLHELGDSAASFTKEEMQ
AGKHTEYMNKLLQDFCQSKSYSLDSQKEETTILGSLDSSVSSPNDASVPHTSESSSYSNG
RNRFRFEDTSMLSVENSGVQVSDRCTTQSDQTSASLREIRKLRHTDKDNSNAVSVSDASL
ADKSKLNYNNSNKQGSWNHSSSNSSSDYSTRKLGKNSYGTFHFKNSSENTNTDKSYVEGI
KGNYVRHHNSTQNRILLPRSIPSNQISTRSESICTNSNGCHRTWCRPNPENSSNIQPLLG
EEPADIDFDPFRESQQGLAELLAAEVSRLNVSEPQFSHRVCLTNGSSVGISHCSSEPQSS
GLDTRLPQANLSLNSAQAEKLRSWYSNIVSHNRSNHVDLNKSFNVSPNTFSNLYPPPGFE
EAIQAHDQSPDGQFLTSKTDILNSNYPELSYSCPESFGYNNNNLRSTNGSLLQSCAFPCS
LPSTESTEKLMTNSPTYDNWIQAKKVSEHNAIYSDTLFPSIPAVLPDISNALKQDDLPPH
LSSQFMTNIFNAVFNSQSSMNNNESTGAYDKSSTKSPASVFDFSQFVNHLYHQSSGFLDI
NAHNPNQWSTRVNIPFVCTQSEVLDASIYSSSLAPISNTLTFGKYGSKMSSLPTSNDYQQ
HQKVAFSTVSILMYLCFFLSLNKVINSISRSTQKCHNQNKLSGIRMFFLKI
NT seq
2136 nt
NT seq
+upstream
nt +downstream
nt
atgcggtctataagggatcttaatcagagcactttacatggaagaccaatccgtgtatca
cttggaactacaaagtactgtagccagtttttaaggggcacgaaatgcaccaaacatgaa
tgcatgtacttgcatgaacttggtgattcagctgctagttttactaaggaagaaatgcaa
gctggaaaacatactgaatacatgaacaagttgttgcaagatttttgtcagtctaaatca
tattcacttgattcacaaaaggaagaaacaactatcttaggttcactagattcttctgtc
tcaagtcccaatgatgcttcagtacctcataccagtgaatcaagcagctactcaaatgga
cgtaatcgcttcagatttgaagatacatccatgctgtctgtagaaaactcgggcgtgcaa
gtttcagaccgatgcactacacagtctgatcaaacaagtgcatcacttagagagattcgt
aaattaaggcatactgataaagataattcaaatgctgtctcagtttccgatgcctcattg
gctgataaatctaaactaaattataataattctaacaaacagggtagttggaatcattcg
tcatcaaattcatcatcagattattcaactagaaagctcgggaaaaactcatatggtact
tttcatttcaagaattcgtctgaaaatacaaatacagataaatcatatgtagagggaatt
aaaggtaactatgtccggcaccataattcaacacagaatcggattttgttgcctcgctct
atcccatctaatcaaatatctacgcgtagtgagtctatttgtaccaacagtaatggctgc
catcgtacatggtgtcgtccaaatccagagaattcttcaaatattcaacccctgttagga
gaggaacccgcagatattgattttgacccctttcgagaatcccagcaaggtttagctgaa
cttctagctgctgaagtttcacgtctcaatgtatctgaacctcagtttagtcatcgtgtt
tgtttaaccaatggatcttcagttggcatttcgcactgttcaagtgaaccgcagtcctca
ggtttagacactaggcttcctcaagctaatttaagtctcaattccgcacaagctgaaaaa
ctgcgttcctggtattctaatatagtatcacataacagaagcaaccatgttgatctaaac
aagtcatttaacgtgagtccaaatactttctctaatctttatcctcctccgggttttgaa
gaggctatacaagctcacgaccagtctccggatggtcagtttttaacatctaaaactgat
atattaaactctaattacccagaattatcatactcatgtcctgaaagctttggatataac
aacaacaacttacgtagcacaaatggatcattgctacagtcatgtgcttttccttgtagt
cttccttctacagagtctacagaaaaattgatgacaaattccccgacatatgataattgg
atacaggctaaaaaggtatccgaacacaatgctatctattcagacactttatttccatcc
attcctgctgtgctacccgatattagtaatgcattgaaacaagatgatttacctccacat
ttatctagtcagttcatgaccaacatatttaatgctgtttttaattcccaatcgagtatg
aacaataatgaatcaactggagcatatgacaaatcctcaacaaaatctccagcttctgtg
tttgacttcagtcagtttgttaaccatctttatcatcaatcctctgggtttttagatata
aatgcccataatcctaatcagtggtccactagggtcaatataccatttgtttgtacacaa
agtgaggttttagatgcttctatttattcaagttcattagcaccaatctctaacacatta
acttttggaaaatatggatctaaaatgagttctctacctactagcaatgactatcaacaa
catcagaaagtggcctttagcacagtaagtatccttatgtatttatgcttctttttgtct
ttgaataaagttattaatagtatatctagatcgactcaaaaatgtcataaccaaaacaag
ttgtctgggataagaatgttttttttaaaaatttag
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