Schistosoma mansoni: Smp_211330
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Entry
Smp_211330 CDS
T01095
Name
(RefSeq) DEAD box ATP-dependent RNA helicase, putative
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
smm
Schistosoma mansoni
Pathway
smm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
smm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Smp_211330
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smm03019
]
Smp_211330
03036 Chromosome and associated proteins [BR:
smm03036
]
Smp_211330
Enzymes [BR:
smm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Smp_211330
Messenger RNA biogenesis [BR:
smm03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
Smp_211330
mRNA degradation factors
5'-3' decay
Decapping complex
Smp_211330
Chromosome and associated proteins [BR:
smm03036
]
Eukaryotic type
Gene silencing
piRNA pathway
Smp_211330
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CMS1
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
29831034
NCBI-ProteinID:
XP_018645294
LinkDB
All DBs
Position
2
Genome browser
AA seq
459 aa
AA seq
DB search
MLCRNFLSLLMSALALKGSDNTANDDWKSTLKLPEKDMRIKTADVTALKGSSFEDFCLKR
DILKGIYEKGWESPSPIQESSIPIALTHRDIMARAKNGTGKTGAYSVPVLESIDTTINKI
QAIILVPTRELALQTSQICIELAKHTAIKIMLVIGGTLLKDDLIRLSQTVHVLIGTPGRL
VDLLSRGLIDISKCKIVVLDEADKLLSEELISGVEEILNGVDKSRQVLVYSATYPVTVQS
FMNQHLRNPYQINLMETLTLKGITEYYAYVQEKHKVHCLNTLFSKLQISQSIIFCSSAQR
VELLAKKITQLGYSCYYIHARMSQQDRNRVFHDFRNGCCRNLVCTDLLTRGIDIPTVNVV
INFDFPKYSETYLHRIGRSGRFGHLGIAINLVTYADRYSLKTVETELVTEIKPIPKEIDK
RLYVAEYQNENNLDPMTREALFNGRGLPSGNKDEVVNNH
NT seq
1380 nt
NT seq
+upstream
nt +downstream
nt
atgttatgtagaaactttttatcattactgatgtctgcattggcattgaaaggcagtgac
aatactgcaaacgatgactggaagtcaacccttaagcttccggagaaggacatgcgtatt
aagacggctgatgtaactgctttgaagggaagcagctttgaagacttttgtttgaagaga
gatatcttgaagggtatatacgaaaaaggttgggagtccccgtcccctattcaagaatcc
agcataccaatagcgctaacgcacagagatataatggcaagagccaagaatggcactggc
aaaactggagcttattcagtccctgtccttgaatcaatcgatactacaatcaacaaaatt
caggctattattttggtacccactcgagaacttgcacttcaaactagccagatctgtata
gaacttgccaaacatacggctattaaaatcatgctggtaattggtggcacactgcttaaa
gatgatttgataagactaagtcaaaccgttcatgttttaatcggtactcctggtcgttta
gtagacttactaagcaggggactcattgacatatccaagtgtaaaattgttgttcttgat
gaagcagacaaactactgtctgaagagctcataagtggagtcgaagagattctcaatggt
gtggataaaagtcgccaagttctcgtttactcagcaacgtacccagttacagttcagtca
tttatgaatcagcatttgcgcaatccctaccaaataaatttaatggagacattaacgttg
aaaggaattactgaatattatgcatatgtacaggaaaaacataaggtacactgcttgaat
acattgttttccaaactacagatcagccagtccataattttctgtagttcagcacaacga
gtcgaacttcttgccaaaaaaatcacccagttgggatattcctgttattatatacatgca
cggatgtctcagcaggaccgcaacagagtctttcatgattttcggaatggttgctgccgc
aaccttgtttgtacagaccttttgactcgtggaattgacattccgactgtgaatgttgtt
ataaattttgacttcccaaaatattctgaaacctatttgcatcgtattggtagatctggt
cgttttggtcatttgggcattgccataaacttggttacgtatgccgatagatattcatta
aaaacagtggaaacagaactggttactgaaatcaaaccaattcctaaagaaatcgacaag
cggttatatgttgcggagtaccaaaatgaaaataatttggatccaatgacaagagaggcg
ctgtttaatggtcgtgggttgccttcaggcaacaaggatgaggttgtaaacaatcattaa
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