Schistosoma mansoni: Smp_212530
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Entry
Smp_212530 CDS
T01095
Name
(RefSeq) helicase, putative
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
smm
Schistosoma mansoni
Pathway
smm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
smm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Smp_212530
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smm03019
]
Smp_212530
03041 Spliceosome [BR:
smm03041
]
Smp_212530
03009 Ribosome biogenesis [BR:
smm03009
]
Smp_212530
03016 Transfer RNA biogenesis [BR:
smm03016
]
Smp_212530
Enzymes [BR:
smm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
Smp_212530
Messenger RNA biogenesis [BR:
smm03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
Smp_212530
Spliceosome [BR:
smm03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
Smp_212530
Complex C
U4/U6.U5 tri-SnRNP related factors
Smp_212530
Ribosome biogenesis [BR:
smm03009
]
Eukaryotic type
Pre-60S particles
Helicases
Smp_212530
Transfer RNA biogenesis [BR:
smm03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
Smp_212530
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
Helicase_C
MTR4-like_stalk
Motif
Other DBs
NCBI-GeneID:
29831082
NCBI-ProteinID:
XP_018644664
LinkDB
All DBs
Position
Unknown
AA seq
850 aa
AA seq
DB search
MREKERGVIWEETIILLPDSVGLVFLSATIPNAREFAEWIVFLHRKPCHVVYTDCRPVPL
QHYVYPCGGDGIHLVVNQNREFIESNFNLALNTLQNAAGNSISDTKSRGRNGGSTRPQPY
CSKLVKLVMDQNLEPLIVFSFSKMDCEFYAMQLNKMDFSTESEKAAIELVFNNAIESLSV
DDRNLPQVQILLPVLRRGIGIHHGGLLPILKEIVEVLFAEGFIKVLYATETFAMGLNMPA
RSVLFTSTRKFDGRDFRLLSPGEYIQMSGRAGRRGKDTRGTVIMMLDDRISADEARRLLL
GEPDRLDSSFYLTNNMILNLLRVEDINPEIMLVKNFQQFQCRSELPYLEKRLNDTESLIK
NICFPEDIDMGQLGAYVKLHHAVAVCEAERWALVSQRKSVIPFFQAGRVVRIRNLDDWDF
GWGIVVHVDRSDSPITHSGHQKSNRMSVICLMEVAEDHILRNSDSTRKPIPFSFVKPADG
VDFQTDTFTSVIQLVSVPLDCLSGISSVCLKLNSLLECDNQNTEQLCNKLSVQPDHVKRR
IWEGVDRAKAKLGGILPVLDPIKDLNIKDDRVKQQCEAINLLKARMAMNPISKRADLDSL
IDRFNWKASNLRKLEDIRERISRTDSLSHFDELRARKRLLRRLCFCSEDDTVALKGRIAC
EISTGDELMLTELLLDGFFSQFSPVQLAGVMSCFVAEKQTKHHMINLSPVMKKAIKTIHD
KARYLAKMSAECNINTGHSNSEKQLTTLVQNLENNRNNLLDDEQAYVDRFVGDLMDVVCA
WAEGVSFSRLCELTSAFEGSVIRCIRRLEELLCQMHNAAKVAGNSELENKFLEAVILIKR
DIIFCASLYL
NT seq
2553 nt
NT seq
+upstream
nt +downstream
nt
atgagggaaaaagaacgcggtgttatctgggaggaaaccatcattttattacctgatagt
gttgggcttgtttttctaagtgcaacaattccaaatgctcgtgaattcgctgaatggata
gtgtttttacatagaaaaccgtgccacgttgtttacactgattgtcgtcctgttccatta
caacactatgtttacccatgtggtggagatggaattcatttggtagtcaatcagaaccgt
gagtttattgaatctaacttcaatcttgctttaaatactttacaaaatgcggctggcaat
tcaatttctgatacgaaatcccgtggacgtaatggtggcagcacccgtcctcaaccatat
tgctcgaagttagttaagttggtaatggaccaaaatttggagccgcttattgtgttttca
tttagcaagatggattgtgaattctatgctatgcaactaaacaaaatggattttagtaca
gaatcagaaaaggcggctattgaacttgtatttaataatgccattgagagtctttccgtt
gacgatcgaaatcttcctcaggttcagattttattacccgtattacgtcgtggaatcggt
attcatcatggcgggttgttgcctatactcaaggaaattgttgaagtgttatttgctgag
ggttttataaaagtattgtatgctactgaaacattcgcgatgggtcttaatatgcctgct
cgatctgtgttattcacgtctactcgaaagtttgatggacgcgacttccgtttactttca
cctggggaatatattcagatgtcaggacgcgcgggtcgtcgaggaaaagatacacgtggc
acagttataatgatgcttgatgatcgtatcagtgcagatgaagccaggagactcttactt
ggtgaacctgaccgactggattcttcattctatctaacgaataatatgatacttaactta
cttcgtgttgaggatatcaatccagaaataatgctcgttaaaaattttcaacaatttcaa
tgcagatctgaattgccctatcttgaaaaacgtttaaatgacacagaatctcttatcaaa
aatatttgttttccggaagatattgacatgggacagcttggcgcttatgttaaacttcat
catgcagttgccgtatgtgaagctgagaggtgggcattggtttcacaaagaaaaagtgtc
atacctttctttcaggctggtagagtggttcgaattcgcaatctggacgattgggacttc
ggatggggaattgttgtacacgtagatcggtctgattctccaataacacattctgggcat
caaaaatccaacagaatgtcagtcatttgtcttatggaagttgctgaagaccacatccta
cgaaattcagattctacaagaaaaccgattcctttttcgtttgtgaaacctgctgatggt
gttgattttcaaactgatacttttacatcggttatccagttagtttctgttcctctagat
tgtttgtctggtatttcaagcgtttgtctcaaactaaattcattattggagtgcgacaat
cagaatactgagcagttatgtaacaagctttcagttcaaccagatcatgtaaaacgacgc
atttgggaaggtgttgaccgtgccaaagcaaaattaggaggaatactgccagtattagat
cctatcaaggatttgaatattaaagacgatcgtgtgaaacaacagtgcgaggcgattaat
ttattgaaagcgcgaatggctatgaatccgatctcgaaacgagctgatctggacagtctt
attgatcgtttcaattggaaagcttctaatttgcggaaactcgaagacattcgtgaacgt
ataagcagaacagactcactttcacattttgacgagttgcgtgcaagaaaaagacttttg
cgaagactttgtttttgttcagaggatgatacagttgcattaaaaggtcgtattgcttgt
gaaatttcaactggtgatgaattgatgctgactgaattgctgctagatgggttcttttca
caattctcaccagttcaactagcaggtgtcatgtcatgttttgtagcagaaaaacaaaca
aaacaccacatgataaatctgagtcctgttatgaagaaggctataaaaactatccacgat
aaagcaagatatcttgcaaaaatgtctgccgaatgtaatattaacacgggccatagtaat
agtgagaaacaattaacgactttggtccaaaatctcgaaaataacagaaataatcttttg
gatgatgaacaagcttatgttgatcgtttcgtcggtgatttaatggatgttgtatgtgct
tgggctgaaggtgtcagtttttctcgactttgtgaattgacaagtgcattcgaaggtagt
gtaattagatgcatcagaagactggaagaacttctatgtcaaatgcataatgcagcaaaa
gttgcaggaaactcagagttggaaaataagtttttagaagccgtaatcctaatcaaaaga
gatatcattttctgtgcaagcctatatctttaa
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