Streptococcus macedonicus: SMA_0007
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Entry
SMA_0007 CDS
T01674
Symbol
mfd
Name
(GenBank) Transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
smn
Streptococcus macedonicus
Pathway
smn03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
smn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
SMA_0007 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
smn03400
]
SMA_0007 (mfd)
Enzymes [BR:
smn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SMA_0007 (mfd)
DNA repair and recombination proteins [BR:
smn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
SMA_0007 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
Cas3-like_C_2
UB2H
AAA_22
AAA_16
RecG_dom3_C
Saccharop_dh_N
adh_short
Motif
Other DBs
NCBI-ProteinID:
CCF01298
LinkDB
All DBs
Position
5533..9042
Genome browser
AA seq
1169 aa
AA seq
DB search
MGKSMNIIDLFSQNKLIQTWHSGVANIGRQLIMGLSASSRALAIASAYQANEEKIVVITS
TQNEVEKLASDLSSLIGEEKVYTFFADDVAAAEFIFASMDKAHSRLEALNFLQDNKQSGI
LITNLVGARVLLPNPEIYAESQLNFVVGKDYNLDKVVKVLSNIGYQKVSQVLNPGEFSRR
GDIFDIYEMTADYPYRLEFFGDEVDGIRQFDAETQKSLSNIEQVTISPADELILSEEDFA
RASKAFETFLETAKDEQQAYLSELYAATQEQYKHKDIRRFLSLFYAKEWTLLDYISKGTP
VFFDDFQKLVDRNAKFDLEVANLLAEDLQCGKAVSSLVYFADIYKDLRQYQPATFFSNFH
KGFGNLKFDKIHNFTQYPMQEFFNQFPLLIDEVNRYQKSKATVLIQADSQHGLERLQENL
HEYGLELPVVAADDLQAQQAQLVVGNLSHGFYFADEKIVLITEHEIYHKKIKRRIRRSNI
SNAERLKDYNELSKGDYVVHHVHGIGKFLGIETIEIHGVHRDYLTIQYQGSSTISLPVEQ
IESLSKYVSADGKEPKINKLNDGRFQKTKQKVSKQVEDIADDLLKLYAERSQLKGFAFSP
DDDLQREFDEDFAFVETEDQLRSIKEIKHDMEEDKPMDRLLVGDVGFGKTEVAMRAAFKA
VKDHKQVAVLVPTTVLAQQHYTNFSERFENYPVTVDVLSRFRSKKEQNDTLDKLKKGQVD
IIIGTHRLLSKDVDFADLGLIIIDEEQRFGVKHKEKLKELKTKVDVLTLTATPIPRTLHM
SMLGIRDLSVIETPPTNRYPVQTYVLETNPGLIREAIIREIDRGGQVFYVYNRVDTIDQK
VSELQELVPEASIGFVHGQMSEIQLENTLMDFIDGVYDVLVATTIIETGVDISNVNTLFI
ENADHMGLSTLYQLRGRVGRSNRIAYAYLMYRPDKILTEVSEKRLDAIKGFTELGSGFKI
AMRDLSIRGAGNILGASQSGFIDSVGFEMYSQLLEEAIAKKQGKSQARRKSNVEMNLQID
AYLPSEYINDERQKIEIYKRIREIESQKDYQSLQDELIDRFGEYPDQVAYLLEIGLVKAY
MDNAFTELVECKDSSLLVRFEKASLQHYLTQDYFEALSKTNLKARIGENQGKIEITFNIR
DKKDYEILEELQNFGKMLAEIKSRKIEKD
NT seq
3510 nt
NT seq
+upstream
nt +downstream
nt
atgggtaagtctatgaatattattgatttatttagtcaaaataagctcattcaaacatgg
catagcggcgtggctaatattggtaggcaactgattatgggcttatcagcttctagtaga
gctcttgccattgcttctgcttatcaggctaatgaggaaaaaatagttgtcatcacctca
acacaaaatgaagttgaaaaattggctagtgatttatctagcttgattggtgaggaaaag
gtttatactttttttgcggatgatgttgcggcggcagagtttatttttgcctcgatggat
aaggcacactcacgcctagaagctttaaattttttacaagataataagcaatctggtatc
ttaattacaaatttagtaggagcccgtgttttactaccaaatccagaaatttatgctgaa
agtcagctaaattttgttgtcggtaaggattacaaccttgacaaggttgtaaaggtactg
tcaaatatcggttaccaaaaagtatcacaggttcttaatccaggcgaatttagtcggcgt
ggtgatatctttgatatttatgagatgacagctgactatccttatcgtttagaattcttt
ggtgatgaagttgatggtattcgtcagtttgatgcagaaacacaaaaatcacttagtaat
attgagcaggtaaccatttccccagctgatgagctcattttatcggaagaagattttgct
agagctagtaaggcatttgagacgtttttagagactgctaaagatgaacagcaagcttat
ttaagtgagctttatgctgcaactcaggaacagtataagcataaagacattagacgtttc
ttatcactcttttatgcaaaagagtggacgttacttgattacatttctaagggaacacca
gtcttttttgatgattttcaaaagctagttgaccgcaatgctaagtttgatttggaagtt
gcaaacttgttggcagaagatttacaatgtggtaaagcagtgtcaagtttggtttacttc
gctgatatttataaagacttacgtcaatatcagccagcaacgttcttttctaattttcat
aaaggatttggtaatcttaaatttgataaaattcataattttacacaatatccaatgcaa
gaatttttcaatcaatttccgttattgattgatgaagttaatcgttatcaaaaatctaaa
gcgaccgttttaattcaagcagattcgcagcatggcttagaacgtttacaggagaattta
catgaatatggtttggaattacctgtggttgctgcagatgatttacaagcacaacaagct
cagctagtcgttggcaatttatcacatggcttttattttgctgatgagaaaattgttctc
attaccgagcatgaaatttatcataagaaaattaagcgccgtattcgtcgttcaaatatt
agcaatgccgaacgtttgaaagactacaatgaattgtcaaaaggtgattatgtggttcac
catgttcatggtattggtaaatttttaggaattgaaacaattgaaatccatggtgtgcac
cgcgattatttgaccattcaatatcaaggttcttcaacaatttcattgccagtagagcaa
attgaaagtttatcaaaatacgtttctgcagatggcaaggaacctaaaatcaataaatta
aatgatggtcgtttccaaaagaccaaacaaaaggtttctaagcaagttgaagacattgcg
gatgatttgttgaaattgtatgcggaacgtagtcagctaaaaggttttgctttttcacca
gacgatgatttgcagcgggaatttgacgaagactttgcttttgtagaaacagaggaccag
cttcgctctatcaaggaaattaagcacgacatggaagaagataagccaatggatcgctta
ttggttggggatgttggctttggtaaaacagaagttgcgatgcgcgccgcttttaaagct
gttaaagaccataaacaagtagctgtcttagtgccaacaactgttcttgctcaacaacac
tacacaaatttctcagagcgttttgaaaattatcctgttacagttgatgtgcttagtcgt
ttccgtagcaaaaaagaacaaaatgacaccctagacaagttgaaaaaaggtcaagttgat
atcattattggtactcatcgtctactatctaaagatgttgattttgctgatttaggtttg
attattattgatgaggagcaacgttttggcgttaagcacaaagaaaaattaaaagagctt
aagactaaagttgatgtattgaccttgacagcgactccaattccacgaacccttcacatg
tcaatgttgggaattcgcgacctgtcagttattgaaacgccaccgactaaccgttaccct
gttcaaacttacgttttggaaacgaatcctggtctgattcgtgaggctatcattcgtgaa
attgaccgtggcggacaagttttctacgtttacaatagggttgacacaattgaccaaaaa
gtgtcagaattgcaagagttggttcctgaagcaagcattggttttgttcatggtcagatg
agtgaaattcaacttgaaaatacgctcatggactttattgacggtgtttacgatgttctg
gttgcgacaactatcattgaaacaggcgttgatatttctaatgttaatactttatttatc
gaaaatgcagaccacatgggcttgtcaaccttgtatcaacttcgtggacgtgttgggcgt
tctaatcgaattgcttacgcctacctcatgtaccgtccagacaagattttgacagaggtc
tctgaaaaacgtttagatgccattaaaggctttacagaattaggttctggtttcaagatt
gccatgcgtgatttatccattcgtggcgctggaaacatcctcggtgcctcacaaagtggt
tttattgactctgttggttttgaaatgtattcgcagttattagaagaggctatcgctaag
aaacaaggcaaatctcaagcgcgccgtaagagcaatgtggagatgaatttacaaatcgac
gcttatttaccaagcgaatatattaatgatgaacgtcaaaaaattgaaatttacaaacgt
attcgtgaaatcgaaagtcagaaagattatcaaagcttacaagatgagttaattgaccgt
tttggcgaataccctgaccaagtcgcctacttacttgaaattggcttggttaaagcttat
atggacaatgctttcacagaacttgtggaatgtaaagatagcagtctattagtacgtttt
gaaaaagcttcgctgcaacattacttgacacaagattattttgaagctctttcaaaaaca
aacttgaaagcccgtattggcgaaaatcaaggtaaaattgaaattacttttaatatccgt
gataaaaaagactatgagattttagaagaacttcagaattttggtaaaatgctagctgaa
atcaaatccagaaaaattgaaaaagactag
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integrated database retrieval system
