Streptococcus macedonicus: SMA_0089
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Entry
SMA_0089 CDS
T01674
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase beta subunit
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
smn
Streptococcus macedonicus
Pathway
smn03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
smn00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
SMA_0089 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
smn03021
]
SMA_0089 (rpoB)
03400 DNA repair and recombination proteins [BR:
smn03400
]
SMA_0089 (rpoB)
Enzymes [BR:
smn01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
SMA_0089 (rpoB)
Transcription machinery [BR:
smn03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
SMA_0089 (rpoB)
DNA repair and recombination proteins [BR:
smn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
SMA_0089 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_1
RNA_pol_Rpb2_45
Peptidase_M23
NusG_add
Motif
Other DBs
NCBI-ProteinID:
CCF01380
LinkDB
All DBs
Position
93671..97243
Genome browser
AA seq
1190 aa
AA seq
DB search
MAGHEVQYGKHRTRRSFSRIKEVLDLPNLIEIQTDSFKDFLDNGLREVFEDVLPITNFTD
TMELEFVGYELKEPKYTLEEARIHDASYSAPIFVTFRLINKETGEIKTQEVFFGDFPIMT
EMGTFIINGGERIIVSQLVRSPGVYFNDKVDKNGKVGYGSTVIPNRGAWLELETDSKDIA
YTRIDRTRKIPFTTLVRALGFSGDDEIIDIFGDSELVRNTIEKDIHKNPSDSRTDEALKE
IYERLRPGEPKTADSSRSLLVARFFDPRRYDLAAVGRYKINKKLNVKTRLLNQTIAENLV
DAETGEILVEAGTVMTRDVIDSIAEQLDGDLNKFVYTPNDYAVVTEPVVLQKFKVVSPVD
PDRIVTIVGNANPDDKARALTPADILAEMSYFLNLAEGLGKVDDIDHLGNRRIRAVGELL
ANQFRIGLARMERNVRERMSVQDNEVLTPQQIINIRPVTAAVKEFFGSSQLSQFMDQHNP
LSELSHKRRLSALGPGGLTRDRAGYEVRDVHYTHYGRMCPIETPEGPNIGLINNLSTYGH
LNKYGFIQTPYRKVDRATGVVTNEIVWLTADEEDEYTVAQANSKLNEDGTFAEEIVMGRH
QGNNQEFPSNIVDFVDVSPKQVVAVATACIPFLENDDSNRALMGANMQRQAVPLIDPHAP
YVGTGMEYQAAHDSGAAVIAKHDGRVVFSDAEKVEVRREDGSLDVYHITKFRRSNSGTAY
NQRTLVKVGDIIEKGDFIADGPSMEKGEMALGQNPIVAYMTWDGYNYEDAVIMSERLVKE
DVYTSVHLEEFESETRDTKLGPEEITREIPNVGEEALKDLDEMGIIRIGAEVKEGDILVG
KVTPKGEKDLSAEERLLHAIFGDKSREVRDTSLRVPHGGDGVVRDVKIFTRANGDELQSG
VNMLVRVYIAQKRKIKVGDKMAGRHGNKGVVSRIVPVEDMPYLPDGTPVDIMLNPLGVPS
RMNIGQVMELHLGMAARNLGIHIATPVFDGATSEDLWDTVREAGMDSDAKTVLYDGRTGE
PFDNRVSVGIMYMIKLHHMVDDKLHARSVGPYSLVTQQPLGGKAQFGGQRFGEMEVWALE
AYGASNVLQEILTYKSDDVTGRLKAYEAITKGKPIPKPGVPESFRVLVKELQSLGLDMRV
LDEDDNEVELRDLDEGEDDDVMHVDDLEKARQKQETESAEKVEDSAEENK
NT seq
3573 nt
NT seq
+upstream
nt +downstream
nt
ttggcaggacatgaagttcagtacggaaaacaccgtacacgtcgtagcttttcaagaatc
aaggaagttcttgatttacctaacttgattgaaattcaaacggattcttttaaagacttc
ttggataatggattgagagaagtttttgaagatgtacttccgattacaaactttacggat
actatggagcttgaatttgttggttacgagttaaaagagcctaaatatacgcttgaagaa
gctcgtatccacgatgcatcttattcggcacctatttttgtaaccttccgtttgattaat
aaagaaacaggagaaatcaaaactcaagaagttttcttcggtgatttcccaatcatgacc
gaaatgggtacattcattatcaatggtggtgaacgtattatcgtttctcagttggttcgt
tctcctggtgtttatttcaacgataaagttgataaaaacggtaaagttggttacggttca
actgtaattcctaaccgtggagcttggcttgaattagaaacagattcaaaagacattgct
tacacacgtattgaccgtacacgtaaaattccatttacaacacttgtacgtgcacttggt
ttctcaggtgatgatgaaatcatagatatctttggtgacagcgagctcgttcgtaatact
attgaaaaagatattcacaaaaatccatcagattcacgtactgacgaagcacttaaagaa
atttacgaacgccttcgtccaggtgaaccaaaaacagctgatagctcacgtagtttgctt
gtagctcgtttctttgacccacgtcgttatgacttggcagctgttggacgttacaaaatc
aataaaaaacttaacgtcaagactcgtctcttgaatcaaaccattgctgaaaacttggtt
gatgctgaaactggtgaaattcttgttgaagctggtacagtaatgacacgtgacgtgatt
gattcaattgctgaacaattagatggtgatcttaacaaatttgtttacacaccaaatgat
tacgctgttgtcactgaacctgttgttcttcaaaaattcaaagttgtgtcaccagttgac
ccagaccgcattgttacaatcgtaggtaatgccaatcctgatgataaagcgcgtgcgctt
acaccagcagacatcttggctgaaatgtcatacttccttaatcttgctgaaggtcttggt
aaagttgacgatatcgaccaccttggtaaccgtcgtattcgtgccgttggtgaattgctt
gctaaccaattccgtattggtcttgctcgtatggaacgtaatgttcgtgaacgtatgtca
gttcaagacaatgaagtgttgacaccacaacaaatcatcaacattcgtcctgtaactgcg
gctgttaaagaatttttcggttcttctcaattatcacagttcatggaccaacacaaccca
ctttctgaattgtctcacaaacgtcgtttgtcagccttaggacctggtggtttgactcgt
gaccgtgctggttatgaagttcgtgacgtgcactacactcactatggtcgtatgtgtcca
attgaaactcctgaaggacctaacattggtttgattaataacttgtcaacatacggacat
cttaataaatatggtttcatccaaacaccatatcgtaaagttgaccgtgctactggtgtg
gttacaaacgagattgtttggttgactgccgatgaagaagatgaatacacggtagcgcaa
gctaactcaaaacttaacgaagatggaacattcgctgaagaaatcgttatgggacgtcat
caaggtaataaccaagaattcccatcaaacatcgttgacttcgtagatgtttctcctaaa
caagtagttgccgttgcgacagcatgtattcctttccttgaaaacgatgactcaaaccgt
gctcttatgggtgccaacatgcaacgtcaagcggtgccattgattgatccacatgcacca
tatgttggtactggtatggaatatcaagcagctcacgattctggtgccgctgttatcgct
aaacacgatggacgcgtagttttctcagatgctgaaaaagttgaagttcgtcgtgaggat
ggttcacttgatgtttaccacattactaaattccgtcgttcaaactcaggtacagcatac
aaccaacgtacacttgttaaagttggtgatattattgaaaaaggtgacttcattgctgac
ggaccttctatggaaaaaggtgaaatggcacttggtcaaaacccaatcgttgcctacatg
acatgggatggttacaactatgaagatgccgttatcatgagtgaacgtcttgttaaagaa
gatgtttacacatcagttcacttggaagaatttgaatcagaaacacgtgatactaagtta
ggccctgaagaaatcactcgcgaaattccaaacgttggtgaagaagctcttaaagacctt
gacgaaatgggtattatccgtatcggtgctgaagttaaagaaggtgatatccttgtaggt
aaagtaacacctaaaggtgaaaaagacctttctgctgaagaacgccttcttcacgcaatc
ttcggtgataaatctcgtgaagtacgtgatacatcacttcgtgtgccacacggtggagat
ggtgttgttcgtgatgttaaaatcttcacacgtgctaacggtgatgaattgcaatcaggt
gtcaacatgctcgttcgtgtttacattgcacaaaaacgtaaaatcaaagtcggagataaa
atggccggtcgtcacggaaacaaaggggttgtttctcgtatcgttcctgttgaagacatg
ccatatcttccagacggaactccagttgatatcatgttgaaccctcttggggtgccatct
cgtatgaatatcggacaagttatggaacttcaccttggtatggcagctcgtaacctcggt
attcacattgcaaccccagtctttgatggggcaacatcagaagacctttgggatactgtt
cgtgaagctggtatggatagcgacgctaagacagttctttatgacggtcgtacaggtgaa
ccatttgataatcgtgtctctgttggtatcatgtacatgatcaaacttcaccacatggtt
gatgataaacttcacgctcgttcagttggtccttactcacttgttacacaacaacctctt
ggtggtaaagcacaatttggtggacaacgtttcggtgaaatggaagtttgggctttggaa
gcttatggtgcatcaaatgtccttcaagaaatcttgacatacaagtcagatgatgtgact
ggacgtcttaaagcttatgaagctatcactaaaggtaaaccaattccaaaaccaggtgta
ccagaatcattccgagtgcttgttaaagaattgcaatcacttggtcttgatatgcgtgtg
cttgatgaagatgacaacgaagtagaacttcgtgatcttgatgaaggtgaagacgacgat
gttatgcacgttgatgaccttgaaaaagctcgtcaaaaacaagaaactgaatctgccgaa
aaagtagaagattctgctgaagaaaataaataa
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