Streptococcus macedonicus: SMA_0090
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Entry
SMA_0090 CDS
T01674
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
smn
Streptococcus macedonicus
Pathway
smn03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
smn00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
SMA_0090 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
smn03021
]
SMA_0090 (rpoC)
03400 DNA repair and recombination proteins [BR:
smn03400
]
SMA_0090 (rpoC)
Enzymes [BR:
smn01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
SMA_0090 (rpoC)
Transcription machinery [BR:
smn03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
SMA_0090 (rpoC)
DNA repair and recombination proteins [BR:
smn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
SMA_0090 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_3
RNA_pol_Rpb1_2
RNA_pol_Rpb1_4
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
CCF01381
LinkDB
All DBs
Position
97421..101059
Genome browser
AA seq
1212 aa
AA seq
DB search
MVDVNRFKSMQITLASPSKVRSWSYGEVKKPETINYRTLKPEREGLFDEVIFGPTKDWEC
ACGKYKRIRYKGIVCDRCGVEVTRAKVRRERMGHIELKAPVSHIWYFKGIPSRMGLTLDM
SPRALEEVIYFAAYVVIDPKDTPLEPKSLLTEREYREKLQEYGQGSFVAKMGAEAIQDLL
KRVDLKSEIAELKEELKTATGQKRIKAVRRLDVLDAFYKSGNKPEWMVLNILPVIPPDLR
PMVQLDGGRFAASDLNDLYRRVINRNNRLARLLELNAPGIIVQNEKRMLQEAVDALIDNG
RRGRPITGPGSRPLKSLSHMLKGKQGRFRQNLLGKRVDFSGRSVIAVGPTLKMYQCGVPR
EMAIELFKPFVMREIVARDYAGNVKAAKRMVERGDERIWDILEEVIKEHPVLLNRAPTLH
RLGIQAFEPVLIDGKALRLHPLVCEAYNADFDGDQMAIHVPLSEEAQAEARILMLAAEHI
LNPKDGKPVVTPSQDMVLGNYYLTMEDSGREGEGMIFKDRDEAVMAYRNGYVHLHTRVGI
AVDSMPNKPWTDEQKHKILVTTVGKILFNDIMPEDLPYLQEPNNANLTEKTPDKYFLAPG
QDIQSAIDSLEINVPFKKKNLGNIIAEIFKRFRTTETSAFLDRLKDLGYYHSTLAGLTVG
IADIPVIDNKQEIIDAAHSKVEQINKAFRRGLMTDDDRYVAVTTTWREAKEKLEQRLIET
QDPKNPIVMMMDSGARGNISNFSQLAGMRGLMAAPNGRIMELPILSNFREGLSVLEMFFS
THGARKGMTDTALKTADSGYLTRRLVDVAQDVIIREDDCETDRGLVIRAITDGKEVTETL
EERLVGRYTKKSVKHPETGEVIVGPDVLITEDTAAEIVKAGVEEVTIRSVFTCNTRHGVC
RHCYGVNLATGDAVEVGEAVGTIAAQSIGEPGTQLTMRTFHTGGVASNTDITQGLPRIQE
IFEARNPKGEAVITEVKGTVVDIEEDASTRTKKVYVQGKTGMGEYVVPFTAHMKVAVGDE
VHRGDPLTEGSIQPKRLLEVRDTLSVETYLLAEVQKVYRSQGVEIGDKHVEVMVRQMLRK
VRIMDPGDTELLPGTLMDIADFTDANKDVVISGGIPATSRPVLMGITKASLETNSFLSAA
SFQETTRVLTDAAIRGKKDHLLGLKENVIIGKIIPAGTGMARYRNLEPLAVNELETSEEA
ETVEATVSTDAE
NT seq
3639 nt
NT seq
+upstream
nt +downstream
nt
gtggttgacgtaaatcgttttaaaagtatgcaaatcacattagcctcaccaagtaaagtc
cgttcatggtcttatggtgaagttaaaaaacctgaaacaatcaactatcgtacgctcaaa
ccagaacgtgaaggtctttttgatgaagtaatctttggaccaacaaaagactgggaatgt
gcttgtggtaaatataaacgtattcgttataaaggaattgtttgtgaccgctgtggtgtt
gaagtaacacgtgctaaagttcgtcgtgaacgcatgggacacattgaattgaaagctcca
gtatcacacatctggtacttcaaaggtattccatcacgcatgggacttactcttgacatg
agtccacgtgctcttgaagaagttatttacttcgctgcttacgtagttatcgatccaaaa
gatactccgcttgaaccaaaatcacttttgactgagcgtgaatatcgtgaaaaattacaa
gaatacggacaaggatcatttgttgcgaaaatgggtgctgaagctatccaagatcttctt
aaacgcgttgatttgaaatctgaaatcgctgaacttaaagaagaattgaaaacagcaaca
gggcaaaaacgtatcaaagctgtccgtcgtttggacgtgcttgatgctttttacaaatct
ggtaacaaaccagaatggatggtacttaacatcttgccagttattccaccagatcttcgt
ccaatggtgcaattggatggtggacgtttcgctgcatctgacttgaatgacctttaccgt
cgtgttatcaaccgtaacaaccgtttggctcgtttgcttgaattgaatgccccaggtatc
attgtgcaaaatgaaaaacgtatgttgcaagaagctgttgatgctcttatcgataacggt
cgtcgtggtcgtccaatcactggtcctggtagccgtcctcttaaatctttgagccacatg
cttaaaggtaaacaaggtcgtttccgtcaaaacttgcttggtaaacgtgttgacttctct
ggacgttcagttatcgccgtaggtccaacacttaaaatgtatcaatgtggtgtgccacgt
gaaatggctatcgaattgttcaaaccattcgtaatgcgtgaaatcgttgcgcgtgactat
gctggtaacgttaaagcagctaaacgtatggttgaacgtggtgatgaacgtatttgggat
attcttgaagaagttatcaaagaacacccagtactccttaaccgcgcaccgactcttcac
cgtttgggtatccaagccttcgaaccagtccttattgacggtaaagcacttcgtcttcac
ccacttgtttgtgaagcctacaatgccgacttcgatggtgaccaaatggccatccacgtg
ccactttctgaagaagcacaagctgaagcacgtattcttatgcttgccgcagaacacatc
cttaaccctaaagatggtaaaccagtcgtaacaccatctcaagatatggttcttggtaac
tactaccttactatggaagactcaggtcgtgaaggtgaaggaatgatcttcaaggaccgt
gatgaagcagttatggcttaccgcaatggttatgttcacttgcatactcgtgtgggtatt
gccgttgatagcatgccaaataagccatggactgacgaacagaaacataaaatcctggtt
acaactgtaggtaagattctcttcaacgatatcatgcctgaggatttaccttaccttcaa
gagccaaacaatgctaatctaacagaaaaaactccagataagtacttcttggcaccagga
caagatattcaatctgctattgacagcttggaaatcaatgtaccatttaagaagaaaaat
cttggaaatatcattgcggaaatctttaaacgtttccgtacaacagaaacatcagctttc
cttgaccgcttgaaagaccttggttactatcattcaactcttgctggtttgacagtgggt
atcgccgatatcccagttatcgataacaaacaagaaattatcgatgcagctcacagcaaa
gttgaacaaatcaataaagccttccgtcgtggtttgatgactgatgatgaccgttatgtt
gctgttaccacaacatggcgtgaagctaaagaaaaacttgaacaacgtctgattgaaaca
caagatcctaagaatcctatcgttatgatgatggactcaggagctcgtggtaacatctct
aacttctcacaacttgccggtatgcgtggtttgatggctgctccgaacggacgtatcatg
gaattgcctatcctatctaacttccgtgaaggtttgtctgtcttggaaatgttcttctca
actcacggtgctcgtaaaggtatgaccgatacagcccttaagactgccgactctggttac
cttactcgtcgtttggttgacgttgcccaagacgttatcattcgtgaagacgattgtgaa
actgaccgtggtcttgttattcgtgctatcactgatggtaaagaagtaacagaaactctt
gaagaacgtcttgttggtcgttacactaagaaatctgttaaacatcctgaaactggcgaa
gttatcgttggtccagatgtattgattactgaagatacggcggctgaaattgttaaagct
ggtgttgaagaagttacaatccgttcagtattcacatgtaacactcgtcatggtgtctgc
cgtcactgttatggtgtcaaccttgcaacaggtgatgcggttgaagttggtgaagcagtt
ggtacaattgccgctcaatctatcggtgaacctggtacacagcttacaatgcgtactttc
catacgggtggtgttgcgtcaaataccgatatcacacaaggtcttcctcgtatccaagaa
atctttgaagctcgtaatcctaaaggggaagccgttatcactgaagttaaaggtactgtt
gttgacatcgaagaagatgcttctacacgtactaagaaagtttacgttcaaggtaaaact
ggtatgggtgaatacgtggtaccattcactgcccacatgaaagttgctgttggtgatgag
gtacaccgtggtgatccacttaccgaaggttctatccaacctaaacgtctccttgaagtt
cgtgacacattatcagttgaaacttaccttcttgctgaagtacaaaaagtttaccgtagc
caaggggtagaaatcggtgataaacacgtcgaagtaatggttcgccaaatgcttcgcaaa
gttcgtattatggatccaggtgatacagaacttctcccaggcacacttatggatattgca
gactttacggatgctaacaaagatgttgttatctctggtggtatccctgcaacatcacgt
ccagtgctcatggggattacaaaagcttcgcttgaaactaactcattcttgtcagccgca
tcattccaagaaacaactcgtgttcttacagatgctgctatccgtggtaagaaagatcat
cttcttggtcttaaagaaaatgttatcatcggtaaaatcattccagctggtacaggtatg
gctcgttaccgcaaccttgaaccactagctgttaatgaacttgaaacaagtgaagaagca
gaaacagttgaagcaactgtttcaacagatgctgaataa
DBGET
integrated database retrieval system
