Streptococcus macedonicus: SMA_0232
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Entry
SMA_0232 CDS
T01674
Symbol
polC
Name
(GenBank) DNA polymerase III alpha subunit
KO
K03763
DNA polymerase III subunit alpha, Gram-positive type [EC:
2.7.7.7
]
Organism
smn
Streptococcus macedonicus
Pathway
smn03030
DNA replication
smn03430
Mismatch repair
smn03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
smn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SMA_0232 (polC)
03430 Mismatch repair
SMA_0232 (polC)
03440 Homologous recombination
SMA_0232 (polC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
smn03032
]
SMA_0232 (polC)
03400 DNA repair and recombination proteins [BR:
smn03400
]
SMA_0232 (polC)
Enzymes [BR:
smn01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
SMA_0232 (polC)
DNA replication proteins [BR:
smn03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
SMA_0232 (polC)
DNA repair and recombination proteins [BR:
smn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
SMA_0232 (polC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
RNase_T
DNA_pol3_finger
PHP
DNA_pol3_a_NII
DNA_pol3_a_NI
HHH_6
tRNA_anti-codon
RNase_H_2
Rv2179c-like
DNA_pol_A_exo1
HHH_3
DEDDh_C
Zn_ribbon_8
YhfH
Motif
Other DBs
NCBI-ProteinID:
CCF01523
LinkDB
All DBs
Position
233557..237951
Genome browser
AA seq
1464 aa
AA seq
DB search
MSELFKKLMEQIDMPLDMRQSSAFSSADIREVKVHSVSRLWEFHFSFAEILPIEIYRELS
YRLVNTFKQADIRATFDIQAETVDFSQPLLQAYYEEAFEHAPCDSASFKASFSKLKVSYD
GTKLLIEAPAFVNNDHFRKNHLPNLARQFEAFGFGKLTIDMVSDEAMTQALREDFTSIRE
AMVEKAVQENHEAVKSLESSMPPTEEAPKPKFDFKERTKQRRSGFENAKITPMVEVTTEE
NRIVFEGMVFDVEKRTTRTGRHIINFKMTDYTSSFAMQKWAKDDDELKKYDMIAKGSWLR
VRGNVENNNFTHALTMNVQDVKEIVHHDRKDLMPEGQKRVEFHAHTNMSTMDALPTVEEL
IDTAAKWGHKAVAVTDHGNVQSFPHGYHRARKNGIKAIFGLEANIVEDKVPIAYNPQDIE
LNEATYVVFDVETTGLSAVNNDLIQIAASKMYKGNIVEQFDEFINPGHHLSAFITELTGI
TDNHVRNAKPIEEVLQMFQDFCQDTVLVAHNATFDVGFMNANYERHGMPIITQPVIDTLE
FARNLYPEYKRHGLGPLTKRFQVSLEHHHMANYDAEATGRLLFIFLKEARENHNLTNMMD
LNTKLVAEDSYKKARVKHATIYVQNQTGLKNIFKLVSLSNVKYFEGVARIPRTVLDAHRE
GLLIGTACSEGEVFDAVLSSGVDAAVKVAKYYDFIEVMPPAIYAPLLAQGTIKDEEGIRQ
VIRDLLEVGRRLNKPVLATGNVHYIEPEDEIYREIIVRSLGQGAPINRPIGRGENAQPAP
LPKAHFRTTNEMLDEFAFLGEDVAYEIVVKNTNDFAERFEEIEVVKKDLYTPFLEKSEER
VAEMTYQKAFEIYGNPLPDIVDLRIEKELTSILGNGFAVIYLASQMLVIRSNERGYLVGS
RGSVGSSFVATMIGITEVNPMPPHYVCPNCQHSEFITDGSVGSGYDLPDKDCPECGTRYK
KDGHDIPFETFLGFDGDKVPDIDLNFSGDDQPSAHLDVRDIFGKQYAFRAGTVGTVADRT
AYGFVKGYERDYGKFYPEAEVERLAQGAAGVKRTTGQHPGGIVVIPNYMDVYDFTPVQYP
ADDLSAEWQTTHFNFHDIDENVLKLDILGHDDPTMIRKLQDLSGIDPKDIPADDPDVMAL
FSGTEVLGVTPEQIGTPTGMLGIPEFGTNFVRGMVEETHPTTFAELLQLSGLSHGTDVWL
GNAQDLIKEGIATLKTVIGCRDDIMVYLMHAGLEPKMAFTIMERVRKGMWLKISDEERNG
YIEAMRENNVPDWYIESCGKIKYMFPKAHAAAYVLMALRVAYFKVHYPIYYYCAYFSIRA
KAFDIKTMSAGLDAVKERMADISNKRKNNEASNVEIDLYTTLEIVNEMLERGYKFGQLDL
YRSDATEFIIDGDTLIPPFVAMDGLGENVAKQIVKAREEGEFLSKMELRKRGGVSATLVE
KMDEMGILGNMPEDNQLSLFDDFF
NT seq
4395 nt
NT seq
+upstream
nt +downstream
nt
atgtcagaattatttaaaaaattgatggagcaaatcgatatgccgcttgacatgcgacaa
tcttctgctttttcatctgcagatattcgtgaagttaaggtgcattctgtatctcgcctc
tgggagttccatttttcatttgcggaaattttgccaattgaaatctatcgtgaattgtct
tatcgattggtgaacacttttaagcaagcggatatcagagcgacttttgatattcaagca
gaaactgtcgatttttcacaacctttattgcaagcctactatgaagaggcttttgagcat
gctccgtgtgatagcgccagcttcaaggcttctttcagtaaattgaaggtctcttatgat
ggcacaaaattattgattgaagcgccagcatttgttaacaatgaccattttcgcaaaaat
catctgcctaatctagcgcgtcaatttgaagcatttggttttggcaaacttaccattgac
atggtttctgatgaagcgatgacgcaagctttacgagaagactttacgtcaattcgcgaa
gctatggtggaaaaagcggtgcaagaaaatcatgaggcggttaaatctctggaatcttct
atgccaccaactgaagaagcaccaaaacctaaatttgattttaaggaacgtaccaaacag
cgccgttcaggtttcgaaaatgccaaaatcacaccaatggttgaagtcacaacagaagaa
aaccgaattgtctttgaaggaatggtttttgacgttgaaaagagaacaactcgtacagga
cgtcacattattaattttaaaatgactgactacacatcaagttttgccatgcaaaaatgg
gcaaaagatgatgatgagttgaaaaaatacgatatgattgccaaagggtcatggcttcga
gttcgtggaaatgttgaaaataataatttcacccatgcattgaccatgaatgtgcaagat
gtcaaagagattgttcatcatgaccgcaaggatttaatgccagaaggtcaaaaacgtgtg
gaattccatgcccatacgaatatgtcaaccatggatgctttgccaacggttgaagaatta
attgatacagcagcgaaatggggacacaaggctgttgctgttactgaccacggcaatgtg
caaagtttcccacacggttatcacagagcacgcaaaaatggtatcaaggcgatttttggt
ttagaagctaatatcgttgaggacaaagtgccgattgcctacaatcctcaagatattgag
ttaaacgaagctacctacgtcgtatttgacgtggaaacgactgggctttctgcggtcaat
aatgacttgattcagattgcagcttcaaaaatgtacaagggaaatattgttgagcagttt
gatgagttcatcaacccaggtcatcatttatcagcttttataacggaattgactggtatt
acggataatcatgttcgcaatgctaaaccgattgaagaagtccttcaaatgttccaagat
ttttgtcaggatactgtgttagttgcccacaatgcaacctttgacgttggctttatgaat
gccaattatgaacgtcatggcatgccaatcattacacaacctgtcattgataccttggaa
ttcgcccgaaatctctatccagaatacaaacgtcatggtttgggaccattgactaaacgg
tttcaagtttcgctagaacaccaccatatggcgaactatgatgcggaagcaacggggcgc
ttgctctttattttcttgaaagaagcacgtgaaaaccacaatttaactaatatgatggat
ttgaatacgaaattggttgctgaggattcttacaagaaagcacgcgtcaaacacgcgacg
atttatgttcaaaaccaaacaggtttgaaaaatattttcaaactcgtcagcctttctaat
gtcaaatattttgaaggtgtggctcgcattccaagaacggttcttgacgcccaccgtgaa
gggctcttgataggaacagcctgctcagagggcgaagtctttgacgcagttttatcttca
ggggtagatgctgcagtcaaagtggcgaaatattatgatttcatcgaagttatgccacca
gcaatttacgctccgctattggcgcaaggaacaatcaaagatgaagaaggtatccgacaa
gtcatccgagatttgcttgaggttggacgtcgtctgaacaagcctgttttggcgactggg
aatgtccattatatcgagcctgaagatgagatttaccgtgaaatcattgtccgtagttta
ggacaaggggcaccgattaaccgtccgattggtcgtggtgaaaatgcccaacctgctccg
ctaccaaaagcgcatttccgtacaaccaatgaaatgctagatgaatttgctttccttggt
gaggatgttgcctacgagattgttgttaaaaataccaatgattttgcggaacgctttgaa
gaaattgaagtcgttaaaaaagacttgtacacccccttccttgaaaaatcagaagaacgt
gtcgctgaaatgacctatcaaaaagcctttgaaatctatggtaatccacttcctgatatc
gtcgatttacgtattgaaaaagaattgacgtcaattttgggtaatggatttgccgtgatt
tacttggcttcgcagatgttggtaattcgttccaatgaacgtggttacttggttggttcg
cgtggttcagtcgggtcaagtttcgtggcaaccatgattgggattaccgaagttaaccca
atgccaccacattatgtctgtccaaattgtcagcattcagaattcatcaccgatggttct
gtcggttctggttatgatttgcctgacaaggattgcccagaatgcggcacacgttacaag
aaagatggacacgatattccgtttgaaaccttccttggttttgatggagacaaggttcct
gatattgatttgaacttctctggagatgaccaaccgtcagctcacttggacgttcgtgat
atttttggtaaacaatacgcctttcgtgctggaaccgtaggtacggtggcggaccgtact
gcttatggatttgttaaaggttacgaacgtgattatggcaaattctatccagaagcagaa
gtggaacgcttggcacaaggtgcagctggcgttaaacgtacgactggacaacacccaggt
ggtatcgttgttattccaaactacatggatgtgtatgattttacccctgttcaataccca
gcggacgatttatcagcagaatggcaaaccactcactttaacttccacgatatcgatgaa
aacgtcttgaaacttgatattctcggtcatgatgatccgaccatgattcgtaaattgcag
gatttatctggtatcgatcctaaggatattccagctgatgacccagacgttatggcgctt
ttctcaggcacagaagtgcttggtgtcacccctgaacaaatcggaacaccgacaggaatg
cttggtattccagaatttgggacaaactttgttcgtggtatggttgaagaaactcaccca
acaacatttgccgaattgctccagttatcagggctttctcatggtaccgacgtttggcta
ggaaatgctcaagatttgattaaagaggggattgccacgctgaaaaccgttatcggttgt
cgtgacgacatcatggtttacctcatgcacgcaggtttggagccaaaaatggcttttacc
attatggaacgtgtgcgtaagggaatgtggcttaaaatctctgatgaggaacgtaatgga
tacattgaagctatgcgagaaaataatgtgcccgactggtacattgaatcctgtggtaaa
atcaagtacatgttccctaaagcccatgcagcagcctacgttttaatggcgcttcgtgta
gcttactttaaagtacattatccgatttactactactgtgcttatttctcaatccgtgct
aaggcctttgatattaagacaatgagtgctgggcttgatgcggtaaaagaacgcatggct
gatatttctaataagcgtaagaataacgaagcttcaaacgttgaaattgatttatacacc
acacttgaaattgtcaatgaaatgctcgaacgtggttataaatttggtcaacttgacctt
taccgtagtgatgcaaccgagtttatcatcgacggtgatacacttattccaccatttgta
gcgatggatggtcttggtgaaaacgttgctaagcaaattgttaaagcacgtgaagaaggc
gaattcctttcaaaaatggaactccgcaaacgtggtggcgtttcagccacattagttgaa
aaaatggatgaaatgggaatcctcggcaatatgccagaagataaccaattaagtctgttt
gatgatttcttctaa
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integrated database retrieval system
