Streptococcus macedonicus: SMA_0454
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Entry
SMA_0454 CDS
T01674
Name
(GenBank) Hydrolase (HAD superfamily)
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
smn
Streptococcus macedonicus
Pathway
smn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
smn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SMA_0454
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smn03019
]
SMA_0454
Messenger RNA biogenesis [BR:
smn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
SMA_0454
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
HDOD
KH_KhpA-B
KH_2
dUTPase
DUF7260
OmpH
LapA_dom
Motif
Other DBs
NCBI-ProteinID:
CCF01745
LinkDB
All DBs
Position
464247..465854
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AA seq
535 aa
AA seq
DB search
MPNIIILIVFALIGLIVGYVLISVRLKSVKEAAELTLLNAEQDAVNLRGQAELEAEHIRK
TAERESKSHCKELLIEAKEEARKYREEIEKEFKSERQELKQMETRLTERASSLDRKDENL
TNKEKVLDSKEQSLTDRSRHINEREKQIGELEEQKKAELERIALMTIAEAREIILTETEN
NLTHEIATRIKDAEREVRDKSSKLAKNILAQAMQRMAGEYVTEQTITTVHLPDDSMKGRI
IGREGRNIRTLESLTGIDVIIDDTPEVVVLSGFDPIRREIARMTLEALIQDGRIHPARIE
ELVEKNRLEMDNRIREYGEAAAFEIGALNLHPDLIKIMGRLQFRTSYGQNVLRHSVEVGK
MAGIIAGELGENVMLARRAGFLHDIGKAVDREVEGSHVEIGTELARKYKENPIVVNAIAS
HHGDVEPESVIAVIVAAADALSSARPGARNESMENYIKRLRDLEEIATSFDGVQNSYALQ
AGREIRIMVQPTKISDDEVTILAHKVRKKIEGNLDYPGNIKVTVIRELRAVDYAK
NT seq
1608 nt
NT seq
+upstream
nt +downstream
nt
atgccaaatattattatcttgattgtttttgccctcattggtttgatagttggttatgtg
ctgatttcagttagacttaagtctgtgaaagaagcggcagaactcactcttttaaatgca
gaacaagacgctgttaatctacgtggtcaagcggagttagaagctgagcatatcagaaaa
acagctgaacgagaaagtaaatcacattgtaaagaattactaatcgaggcaaaagaagag
gctagaaaatatcgtgaagagattgaaaaagaatttaaatctgaaaggcaagagttaaaa
caaatggaaactcgtttaacagaacgagcttcttctcttgaccgcaaggatgaaaaccta
accaacaaggaaaaagtgttggatagtaaagaacaaagtctaaccgatagatctagacac
attaatgagcgtgaaaaacaaatcggagaactagaagaacagaaaaaagcagaacttgaa
cgcatagcgctcatgacgattgctgaagcgcgtgaaattattttaacggaaacagaaaat
aatttgacgcacgaaattgctactcgtatcaaagatgctgaacgtgaagtccgagataaa
tctagcaaacttgctaaaaatattctagcgcaagctatgcaacgtatggcaggtgaatat
gttactgaacaaactattacaacagttcacttaccagacgatagcatgaaaggtcgtatc
attggacgtgaaggacgtaatatccgcacacttgaaagtttgacaggaattgacgttatc
attgatgatacccctgaagttgttgttctttcaggatttgatccgattcgtcgtgaaatc
gctcgaatgactttggaagctttgattcaggacggacgtattcacccagctcgtatcgag
gaattggttgaaaaaaatcgtttggaaatggataaccgtattcgtgaatatggtgaggct
gctgcatttgaaattggagcccttaacttgcaccctgatttaattaaaatcatgggacgc
ctgcaatttagaacatcatacggtcaaaacgtcttacgtcattctgtcgaagttggtaag
atggcaggtattatcgcaggagagcttggtgagaatgtgatgcttgctcgtcgtgcaggt
ttcttgcatgatatagggaaagccgttgaccgtgaggttgagggaagccacgttgaaatc
ggaacggaacttgctcgtaaatacaaggaaaatccgattgtcgttaatgccattgctagt
caccacggtgatgtagaaccagaaagtgttatcgctgtgattgttgcagctgcggatgcg
cttagctcagctcgtccaggtgctcgtaacgaatcaatggaaaattacatcaaacgcctt
cgtgatttggaagaaattgccacaagctttgatggtgttcaaaatagctatgctttgcaa
gcaggacgtgaaatccgcatcatggtgcaaccaactaaaatttctgatgatgaggtaacg
atcttagctcacaaagttcgtaaaaaaattgaaggtaatcttgattacccaggtaacatt
aaagttaccgttatccgtgaacttcgtgcagttgactatgcaaaataa
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