Streptococcus macedonicus: SMA_1603
Help
Entry
SMA_1603 CDS
T01674
Symbol
rnr1
Name
(GenBank) 3'-to-5' exoribonuclease RNase R 1
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
smn
Streptococcus macedonicus
Pathway
smn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
smn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SMA_1603 (rnr1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smn03019
]
SMA_1603 (rnr1)
03016 Transfer RNA biogenesis [BR:
smn03016
]
SMA_1603 (rnr1)
Enzymes [BR:
smn01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
SMA_1603 (rnr1)
Messenger RNA biogenesis [BR:
smn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
SMA_1603 (rnr1)
Transfer RNA biogenesis [BR:
smn03016
]
Prokaryotic type
tRNA degradation factors
SMA_1603 (rnr1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
CSD2
S1
RNase_II_C_S1
HTH_DeoR
OB_HELZ2
S1_RRP5
Motif
Other DBs
NCBI-ProteinID:
CCF02894
LinkDB
All DBs
Position
complement(1566960..1569305)
Genome browser
AA seq
781 aa
AA seq
DB search
MNEKIIAYLEEHGKVNINELATGLDMAGAEKFPKLIKEISKLESQGKLRFDDHGNLALRK
KIEKKKEITVTGVFRANKAGFGFLAVDENEDDMFLGRNDVGHAVDGDTVEAVVKKPANRL
KGTAAEGRIVGIVERSLKTVVGKFIFDDEKPKYAGYIKSKNQKIQQKIYIKKDPVLLDGT
EIIKVDIDKYPTRGHDYFVGHVRDIVGHQGDVGIDVLEVLESMDIKSEFPEDVMAEANAV
PDAPSEKDMIGRVDLRNEITFTIDGADAKDLDDAVHIKLLNNGNFELGVHIADVSYYVTE
DSALNREAVARGTSVYVTDRVVPMLPERLSNGICSLNPNVDRLTLSCLMEIDRNGHVVNH
QICQSVIKTTFRMTYSDVNDIIAGDEELIEQYQPIVDSIHHMTALHNILETMRVRRGALN
FDTSEAKIIVNDKGMPVDIVLRQRGIAERMIESFMLAANETVAEHFAKRKLPFIYRIHEE
PKAEKLQKFLDYASIFGVQIHGTANKITQQALQDFMEKVEGKPGAEVLNMMLLRSMQQAR
YSEHNHGHYGLAAEYYTHFTSPIRRYPDLLVHRMIREYTQLTDEKIEHFRNVIPELATSS
STLERRAIDAERVVEAMKKAEYMEEYVGQEFDGVVASVVKFGMFIKLPNTIEGLVHITTL
PEFYNYNERTLTLQGEKSGKVFRVGQPIKIKLTRADKETGDIDFEYIPSEYDVVEKVKKS
RKDRSGKEKRRPKADNHKGSKSNKPRNRKSSTSTSKKSGKKPFYKEVAKKNHVKLKNKTA
N
NT seq
2346 nt
NT seq
+upstream
nt +downstream
nt
atgaatgaaaaaattattgcttatttagaggagcatgggaaagtcaatattaatgaattg
gctactgggctagacatggctggcgctgaaaaatttccaaagcttatcaaagagatttca
aaattggaaagccaaggaaaactgcgttttgatgaccatgggaaccttgctcttcgtaaa
aaaatagagaagaaaaaagaaatcaccgttacgggtgtttttcgtgctaacaaggctggt
tttggttttttagcggttgatgaaaatgaagatgacatgtttctcggacgtaatgatgtt
ggtcatgcggttgacggagatacggttgaagcagttgttaaaaagccagctaatcgcttg
aaaggtacagcagctgagggtcgcattgtcggcattgttgagcgtagcttaaaaacagtt
gttgggaaatttatttttgatgacgaaaaaccaaaatacgctggttacattaaatctaaa
aatcaaaaaattcaacaaaagatttatatcaagaaagatcctgttttgcttgacggtact
gagattatcaaggttgacattgataaatacccaacacgtggtcatgattattttgttggt
catgtgcgtgatatcgttggacaccaaggtgatgttggtattgatgtgcttgaagtcctt
gaatcaatggacatcaaatcagaatttccagaagatgttatggctgaagctaatgccgtt
ccagatgcgccgtctgaaaaagacatgattggtcgtgttgatttgcgtaatgaaataacc
tttaccattgatggtgcggatgccaaagacttggatgacgctgtccatattaaattactt
aacaatggtaattttgagctcggtgttcatattgcggacgtttcatactatgtcacagaa
gactctgcgcttaatcgtgaagccgttgctcgtgggacatcagtttatgtgactgaccgt
gtagttccaatgctgcctgaacgtttgtcaaatggtatttgttcgttaaatcctaatgtt
gaccgtttgacactatcatgtttaatggaaattgaccgcaatggtcacgttgttaatcac
caaatttgtcaatcagtcattaagacaactttccgtatgacttacagcgatgtcaatgac
attattgctggtgatgaagaattgattgagcaataccaaccaatcgttgactctattcat
catatgactgctcttcacaatattcttgaaaccatgcgcgtgcgccgcggtgctcttaac
tttgatacgagcgaagctaagattattgttaatgataaaggaatgccagttgatattgtg
cttcgtcaacgtggtattgctgaacgcatgattgaatctttcatgttggcagctaatgaa
acagttgcagagcattttgcaaaacgtaaattgccatttatttaccgtatccatgaggaa
ccaaaagctgaaaaattacaaaaattccttgattatgctagcatttttggcgttcaaatc
catggtacagctaacaaaatcactcaacaagctttgcaagatttcatggaaaaagtggaa
ggtaaaccgggcgcagaagtgttaaacatgatgcttcttcgttcaatgcaacaagcacgt
tattctgaacataatcacggacactatggtttggctgcggagtactatactcacttcaca
agtccaattcgtcgttatcctgatttacttgttcaccgcatgattcgcgaatacacacaa
ctcactgatgagaaaatcgaacactttagaaatgtgattccagaattggcaacgtcatct
tcaacccttgaacgtcgcgctattgatgctgaacgtgtcgttgaagccatgaaaaaagcc
gaatacatggaagaatacgttggtcaagaatttgacggtgtggttgctagtgtcgtgaaa
tttgggatgttcatcaaattgccaaatacaatcgaagggcttgtccacatcacaactctg
ccagaattttacaattacaacgaacgtacattgacccttcaaggtgaaaaatcaggaaaa
gttttccgtgttggtcaaccgattaaaatcaaattaacacgtgctgataaagaaactggc
gatattgactttgaatacattccaagtgagtatgatgtggtagagaaagttaaaaaatca
cgcaaagaccgttctggtaaagaaaaacgtcgtccaaaagcggataaccacaaaggttca
aaatcaaacaaaccacgaaatcgtaaatcttccacttcaacttctaaaaagtcaggcaag
aaacctttctataaagaggttgctaagaaaaatcacgtaaagctaaaaaataaaactgct
aattaa
DBGET
integrated database retrieval system
