Selaginella moellendorffii: SELMODRAFT_101229
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Entry
SELMODRAFT_101229 CDS
T01496
Name
(RefSeq) hypothetical protein
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
smo
Selaginella moellendorffii
Pathway
smo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
smo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
SELMODRAFT_101229
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
smo03041
]
SELMODRAFT_101229
Enzymes [BR:
smo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
SELMODRAFT_101229
Spliceosome [BR:
smo03041
]
Complex C
Other components
Step II factors
SELMODRAFT_101229
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_22
AAA_19
ResIII
nSTAND3
AAA_30
FtsK_SpoIIIE
PhoH
ABC_tran
AAA_16
AAA_29
SLFN-g3_helicase
Motif
Other DBs
NCBI-GeneID:
9636434
NCBI-ProteinID:
XP_002974342
JGI:
101229
UniProt:
D8RTS7
LinkDB
All DBs
Position
Unknown
AA seq
701 aa
AA seq
DB search
MAASKSPGRFKQRNAIAPHSQQASARRKSIEEQRRALPITIARQKLVDEVHKNDTLVIIG
ETGSGKTTQLPQFLLRAGFSKRGKMIGITQPRRVAAVTVATRVAEEMGSELGREVGYSIR
FEDATSDLTRIKYMTDGMLLREALLDPLLRKYGVIVIDEAHERTVHTDVLLGLLKGVQAK
RTEEHGPKKEPLKLIVMSATLDAQGFSTFFNNAKIVYIQGRQFPVEIFYTFTSEADILDA
SLITLLQIHTEEEPGDILVFLTGQEEIESMDRLIHDRLPRLPPGSLKIQVVPIYAALPSE
QQVKAFIPAPPGTRKVILATNIAETSVTIPGIRYVVDPGLVKSRSYNPRIGLESLIVVPV
SKAQALQRSGRAGREGPGKCYRLYMEETFKQLENATVPEIKRCNLASVVLQLKALGIDDV
LGFDFMDKPPKMAILKSLEHLYILGALTDEAKLSDPVGIQMARLPLEPLYAKALLISANF
NCSKEMLSAVAMLSVESIFFVPKDKKKEADAAKQRFLSGDGDHITLVSVMRAFTDEVNKS
GGGVVSKKQILRWCIENYINMRSLKRAVDIYRQIEGCIQAINLPVLSCGEDFTSFRRCLA
AAFFLNAACLQQDGTYRTLANNQVVSVHPSSIMHGKKLDCVVFNELVKTNKQFIRNVTRI
DSLWLPELAPHFYGTRDAVSACPVCESSSDDMILGCRLVQT
NT seq
2106 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgtccaaatcgcccggccgattcaagcagcgcaatgctatcgcgccgcattcg
cagcaagctagtgccaggaggaaatcgatcgaggagcagcggcgcgcgcttcctatcaca
atcgctcggcagaaattggtggacgaggtccacaagaacgacactcttgtgatcatcggt
gagactggaagtggaaaaactacgcaacttccgcagttcttgcttcgtgccggcttttcc
aagcgtggaaaaatgattggaatcacgcagccgaggagagtagctgctgttactgtggct
actcgtgttgcggaagagatgggaagcgagctgggacgtgaagttggatactcgatccgg
ttcgaggatgcgacgtccgacttaacgaggatcaagtacatgaccgacggaatgctcctc
agggaagctctgcttgatcctttgcttcgaaagtatggcgtaattgtaatagacgaagct
cacgaaagaacagtacatactgacgttctcttgggacttttgaaaggcgtccaagctaaa
cgcacagaggagcatggaccaaagaaagaaccgctcaagcttattgttatgtcggctacg
cttgacgcgcaaggattctcaacttttttcaacaatgcgaagatagtctacatacaagga
cggcagtttccagtggaaatcttttacacttttacgtccgaagcagacatcttggatgcg
tcattgataacgttgctccagattcatacggaagaagaaccaggagatatacttgttttt
ctgacgggacaagaagagatcgagtctatggataggctgatacacgatcgactgccacgc
ctccctccaggatcattaaaaattcaagtagttcctatatatgctgctttacccagtgag
cagcaagttaaagcttttattccagcaccacctggaacccgtaaggttatcttagccacc
aacattgcagaaacttctgtaactattccaggaatacgctacgtcgtagatcctggtcta
gtaaagtcccggtcctacaatcctcgcatcggtctggagtcgttgatagttgtgccggta
tcaaaagcgcaagcccttcagcggagtggtcgtgcaggaagagaaggacctggcaagtgc
tacaggttgtatatggaggagacattcaagcagcttgagaacgctactgttcctgaaatc
aagcggtgcaatcttgctagcgttgtgttgcagttgaaggcgctgggcattgacgatgtt
ctcggcttcgatttcatggacaaaccaccaaagatggccatattgaagtccctcgaacac
ttatatatattgggagcactgacagacgaggcaaagctttcagatccagttggtatccag
atggctcgcctgcctctggagcctctctacgcaaaagccttactcatctcagcaaacttt
aattgtagcaaagagatgctatccgctgtcgcaatgctttctgtcgagtcgatcttcttc
gtaccaaaagataaaaagaaagaggcggatgctgcaaaacaacgatttttgagcggagac
ggtgaccacataactcttgtcagtgttatgcgcgcctttacagatgaagtaaataagagc
ggaggcggcgtggtttcgaagaagcaaatccttcggtggtgcatcgagaactatatcaat
atgcgttctctaaagcgtgccgtggatatctataggcaaatcgaaggttgcatacaagca
attaacctgcctgtgctttcatgtggagaggacttcaccagctttcgcaggtgtctggca
gccgcattctttttaaatgcagcctgtctacagcaagatggtacctacagaacgctggca
aacaatcaagttgtttccgtccatccctcctcaataatgcatgggaagaagctggattgc
gtcgttttcaatgagctggtgaagacgaacaaacagttcattagaaatgtgacgaggatc
gactctctgtggcttccagagcttgcaccccacttctacggtacccgagatgcggtaagc
gcttgtcctgtatgtgaaagttcttctgatgacatgatcctcgggtgtcgtctggtgcag
acgtag
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integrated database retrieval system
