Selaginella moellendorffii: SELMODRAFT_103968
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Entry
SELMODRAFT_103968 CDS
T01496
Name
(RefSeq) hypothetical protein
KO
K14809
ATP-dependent RNA helicase DDX55/SPB4 [EC:
5.6.2.7
]
Organism
smo
Selaginella moellendorffii
Brite
KEGG Orthology (KO) [BR:
smo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
smo03009
]
SELMODRAFT_103968
Enzymes [BR:
smo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SELMODRAFT_103968
Ribosome biogenesis [BR:
smo03009
]
Eukaryotic type
Pre-60S particles
Helicases
SELMODRAFT_103968
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
DUF4217
ResIII
DnaT
AAA_22
Motif
Other DBs
NCBI-GeneID:
9630377
NCBI-ProteinID:
XP_002975553
JGI:
103968
UniProt:
D8RX15
LinkDB
All DBs
Position
Unknown
AA seq
542 aa
AA seq
DB search
MRFEDLALSAETLAVLRGNGFYDLTPVQERIIPQLCRGQDALVCAVTGSGKTLAFVVPIV
EILRKHSASFHPGQVGAIVVAPTRELASQIFDVSRPFFAGLNEFDPVLLVGGADVSLDVS
SIENCPRAKVLVGTPGRLLDIMQRCSSHLDFSSLKVLILDEADRLLEMGHDRRVSEIISL
LPGQRITGLFSATETKELAVKAGVRQEYSFQTKKQTPSTLSVQSTNSDFSQYLISDADEK
SSQLAQFLLEHKSKKTIVYFMTCASVDYWGTILQKVDIMKNVSIVVLHGKMKQKSRENAL
QRFTDMPSGVLFCTDVAARGLDIPGVDWIVQYDPPQDPNTFVHRVGRTARIGRVGHSVVF
LLPKEDTYVEFLRIRNVPVEERNKPEAMDIIPMLRAAAESDRDVMEKGLKAFVSYFRAYK
EHHCNYIFQWKKLQLGKIAMGFGLLQLPSMPELKRGIFTSQHFVPVEGIDFSAIKYRDKS
REKQRQRELKAAPRKRSKPEKCSKQDKKKIAAVKKLPGKKRSLRDMEELNEDYRQWKKQR
QK
NT seq
1629 nt
NT seq
+upstream
nt +downstream
nt
atgaggttcgaggatctggcgctcagcgccgagacgctggctgtgctgcgcggcaatggc
ttctacgatctcacgccagttcaggagcgcattatcccgcagctctgccgcggccaagac
gcgctcgtttgcgccgtcacgggctccggtaagacgcttgcgtttgtcgtccccatcgtt
gagatccttcgcaagcactcggcttccttccatccaggacaggttggagcgattgttgtg
gcaccgaccagagaattggcgtctcagatctttgatgtgtcgcggcccttctttgcaggc
ctaaacgagtttgatcctgtgctgcttgttggtggtgccgacgtctctttagatgtttcc
agcatcgagaattgcccccgagcaaaagttttggttggcactcctggccgcctgctggac
atcatgcagcggtgttcttctcacttggatttttcttccttgaaggttttgattctggat
gaagcggaccggctgcttgagatgggacacgatcgtcgcgtctcggaaatcatcagtctg
cttcctggacaacggataaccgggcttttctctgcgacggaaacaaaagaacttgcggtg
aaagctggtgtccggcaggaatacagctttcaaacgaaaaaacagactccttcgacactc
agtgtacagagcactaactccgacttctcgcagtatctcatcagcgatgctgatgaaaag
tcctcgcagttagcacaattccttcttgaacacaagtccaagaaaactattgtatacttt
atgacctgcgcctccgtggattactggggaaccatccttcagaaggttgatatcatgaag
aatgtgtcgatcgtggtgctacatggtaaaatgaaacagaaatcccgtgaaaatgccttg
caaagattcaccgacatgccatcgggtgtgctcttctgcactgatgtcgctgctcgcgga
ctcgatatacctggtgtcgactggattgtgcagtatgatcctcctcaagatccaaacacg
tttgttcatagagtcgggcgtactgcaagaattggacgcgttggccattctgttgtgttc
cttcttccaaaggaggatacgtatgtggagtttctgcgcataaggaacgttcccgtcgaa
gagagaaacaagccggaggcgatggatatcattccaatgttgcgtgcagccgctgaaagt
gatcgagatgtaatggagaagggactgaaagcattcgtatcgtattttcgagcgtacaag
gagcaccactgtaactacattttccagtggaagaaactgcagcttggcaagattgccatg
ggctttggtctcttgcagctaccttcgatgccagagctaaagcgaggcattttcacgtcg
caacattttgtccccgtcgaggggatagatttcagtgctatcaagtaccgtgacaaatcg
cgggagaagcagaggcaaagggagctaaaagctgctcctcgcaaacgttccaagcccgag
aaatgttccaaacaagacaagaagaagatcgcagctgtgaagaagctccccggcaagaaa
agaagcttgagagacatggaagagctgaatgaagattaccggcagtggaagaaacagcga
caaaagtga
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