Selaginella moellendorffii: SELMODRAFT_105510
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Entry
SELMODRAFT_105510 CDS
T01496
Name
(RefSeq) hypothetical protein
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
smo
Selaginella moellendorffii
Brite
KEGG Orthology (KO) [BR:
smo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smo03019
]
SELMODRAFT_105510
03041 Spliceosome [BR:
smo03041
]
SELMODRAFT_105510
03036 Chromosome and associated proteins [BR:
smo03036
]
SELMODRAFT_105510
Enzymes [BR:
smo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SELMODRAFT_105510
Messenger RNA biogenesis [BR:
smo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
SELMODRAFT_105510
mRNA cycle factors
Common to processing body (P body) and stress granule
SELMODRAFT_105510
Spliceosome [BR:
smo03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
SELMODRAFT_105510
Chromosome and associated proteins [BR:
smo03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
SELMODRAFT_105510
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
SBP_bac_11
Motif
Other DBs
NCBI-GeneID:
9649361
NCBI-ProteinID:
XP_002976475
JGI:
105510
UniProt:
D8RZF8
LinkDB
All DBs
Position
Unknown
AA seq
613 aa
AA seq
DB search
MPSVWADSVEAEAAANPPPPPPIVANSGGSSGAPGRPNRSTYVPPHLRNRGGQGASPPPI
PAQYHSNPGTPRSGGNWAPPSPSFAKGWENPGYANGRSWGGGGGGRRDREVNPFAEEEAS
EVIFNNENTGINFDAYDDIPVEASGENIPPAITSFADVDLGPVLNENIRRCKFVKPTPVQ
KHAIPISLHGRDLMACAQTGSGKTAAFCFPIIAGILWNFPPGSRHARGSRKAFPLALILS
PTRELSSQIHDEAKKFAYQTGVKVVVIYGGTSVQSQLKELERGVDILVATPGRLDDLMQR
GRISLSLVRYLALDEADRMLDMGFEPQIRKIVENTDMPPPGQRQTMLFSATFPREIQRLA
ADFLYNYIFLAVGRVGSSTDLIVQRVEYVHDVDKRSMLMDMIHAQKPNGLNGQLPLILVF
VETKRGADSLEDWLIQMGISATTIHGDRTQVEREHALRSFRTGVTPILVATDVAARGLDI
PHVAHVINYDLPSDIDDYVHRIGRTGRAGKSGFATAFFTDKDTSLARPLVDLMQEANQQV
PEWLASCAAHSNFGRSHRSGSRFGGRDYRKKGGRGGGGHGYGHGHGHGYGGHGGHGHGYG
GGHHGASSAWDES
NT seq
1842 nt
NT seq
+upstream
nt +downstream
nt
atgccgtcggtctgggcggattcggtcgaggcggaggccgcggcaaatcctcctccgcct
cctccgatcgtagcaaattccggtggatcgtccggagctccagggcggcccaatcgatcc
acctatgttcctccacacttgaggaaccggggaggacaaggtgcatcacccccaccaata
ccagcacagtaccacagcaatcctggaactcctcggtcgggtggtaactgggctcctcca
tcgccatcctttgcgaaaggatgggagaatcccgggtacgccaatggacggagctggggt
ggtggtggaggtggtcgaagggatagagaagtgaatccttttgccgaggaagaggctagc
gaggtcatcttcaacaacgagaacactggcatcaacttcgacgcttacgacgacatcccg
gtggaggccagcggcgagaacatacctcctgcgatcaccagctttgcggacgtggacctg
gggccggtgctcaacgagaacatcaggaggtgtaagttcgtcaagccgacgccggtgcaa
aagcatgccattccaatatctttgcatgggagggatttgatggcttgcgcacagacagga
tcgggaaagaccgcggctttttgcttcccgatcattgccgggattctctggaacttcccg
ccgggatctcgacatgctcgtggaagcaggaaggcgtttccgctggctttgatactgtca
cccacgcgtgagctatctagtcagattcacgatgaagcgaagaagtttgcgtaccaaaca
ggagtgaaagtggttgtcatttacgggggtacttcggtccagtcacagttgaaagagcta
gaaaggggggtggatatcctggtggcaactccaggtcgcctggacgaccttatgcaacgg
ggcaggatttctctgtccttggtccggtatctggcattggacgaggcagaccggatgctt
gatatgggttttgagccacaaatccggaagattgtggaaaacaccgacatgccaccgccc
ggccaacgtcaaacgatgcttttcagtgctacattcccacgcgagatccagagactcgcg
gctgactttctctacaattacatttttcttgctgtgggaagggtaggctccagcactgac
ctgatcgtccagagggtcgagtacgtccacgacgtggataagcggagcatgttaatggac
atgatacacgctcagaaaccaaacggattgaatggacagcttccgttgatactagtgttt
gtcgaaacaaagcgaggtgctgattctttggaggactggttgatccagatgggaatctcc
gccaccaccattcatggagatcggactcaagtggagcgtgagcacgcgttgcggtcgttt
cgaaccggggtgactccgattctagtcgccaccgacgttgcggctcgcggcctcgacatc
cctcacgtcgcccacgtcataaactacgatctcccgagcgacatcgacgactacgtccac
cgcattggccggacaggaagagcaggcaagagtggctttgcgaccgcgttcttcaccgac
aaggatacgtcgctggcgaggccgctggtggatctaatgcaagaggccaaccagcaagtc
cccgagtggctggcaagttgcgctgcacactcgaactttggcaggagtcatcggtcgggg
tcgaggtttggcggcagggactatcgaaagaaaggtggaagaggtggtggtggtcatggt
tacgggcatggtcacggccacgggtatgggggtcacggtggacacggtcatggttacggt
ggtggacatcacggggcttctagtgcctgggacgagagctga
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integrated database retrieval system
