Selaginella moellendorffii: SELMODRAFT_107227
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Entry
SELMODRAFT_107227 CDS
T01496
Name
(RefSeq) hypothetical protein
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
smo
Selaginella moellendorffii
Pathway
smo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
smo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SELMODRAFT_107227
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smo03019
]
SELMODRAFT_107227
03041 Spliceosome [BR:
smo03041
]
SELMODRAFT_107227
03009 Ribosome biogenesis [BR:
smo03009
]
SELMODRAFT_107227
03016 Transfer RNA biogenesis [BR:
smo03016
]
SELMODRAFT_107227
Enzymes [BR:
smo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
SELMODRAFT_107227
Messenger RNA biogenesis [BR:
smo03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
SELMODRAFT_107227
Spliceosome [BR:
smo03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
SELMODRAFT_107227
Complex C
U4/U6.U5 tri-SnRNP related factors
SELMODRAFT_107227
Ribosome biogenesis [BR:
smo03009
]
Eukaryotic type
Pre-60S particles
Helicases
SELMODRAFT_107227
Transfer RNA biogenesis [BR:
smo03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
SELMODRAFT_107227
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
ResIII
nSTAND3
Motif
Other DBs
NCBI-GeneID:
9655761
NCBI-ProteinID:
XP_002977368
JGI:
107227
UniProt:
D8S1Z0
LinkDB
All DBs
Position
Unknown
AA seq
987 aa
AA seq
DB search
MAAASTKRGAEDDLASPSLKQAKISETLAPAAIERGCIHEIAYPDGFQASGEKRDAPAKP
AKEYPFTLDAFQREAIAALEAGESVMVSAHTSAGKTVVAEYAIAMALRDQQRVLYTSPIK
ALSNQKFRELAEEFSDVGLMTGDVTISPNASCLVMTTEILRSMQYRGSEVMREVAWIIFD
EVHYMRDRERGVVWEESIVMAPKNARFVFLSATVPNAKEFADWVAKVHQQPCHIVYTDFR
PTPLQHYIFPAGGDGLYLVVDEQGTFREDSFSKAVNAVAIADPKKDGKWQKRKEEGKDEP
SDIWKIVKMIIARQYDPVIVFSFSKRDCEHLAMQMSKMDLNSEDEKKLVEGIFRNAMDSL
SEDDKKLPQVSLALPYLKRGIGVHHSGLLPILKEVIEILFQEGLVKCLFATETFSIGLNM
PAKTVVFTNVRKFDGDKFRWITSGEYIQMSGRAGRRGLDNFGVCIFMLDEKLEPAVAKQI
VKGTADPLNSAFHLSYNMILNQMRCEESNPEDLLRQSFHQFQSDRSLPILEQRVKNLEEE
RASVLIEEEEKLAEYYSSVNQLRKIKNQIREIILAPRSCLPFLQPGRLVRIFRSADAVEQ
QNSVLMEQDPAVWGVIINFEKAQSKDSDEGKPNGAHLKYVVDVLVNCVTEKEGDRPKVAR
PVSLDEDGQPLVTAFPLSQVESLSAVRIRIPRDLRPAEAREQTLRTVLEVLKRFPDGLQL
LDPEDDMKVESSDYKKLVRRVEALETLIAKHPVAKSPTLNERLRLLQKKEDLAETIRVAR
KEVRAASALIFKDELKARRRVLRRLSYATRDDVVQLKGLVACEISSADELIVTELIFNGV
FKDVTAEQAAALLSCFVWQEKTKMAKPLSQELAGLFSQLQDTARQVGKLQVECKVVPVDV
EEYVNSFRPDIMEGVHAWCTGKSFLEVLKVAEVFEGSLIRALRRLEELVQQLVTASKAIG
EADMEAKFQDASTKMKRDIVFAASLYL
NT seq
2964 nt
NT seq
+upstream
nt +downstream
nt
atggcggctgcgtccaccaagcgcggcgccgaggatgatctcgcgtcgccatcgctcaag
caggccaagatttccgagacgctagcgccggcggcgatcgagcggggttgcattcacgaa
atcgcgtatccggatggattccaggcttcaggtgagaagcgtgacgctcccgcgaagcct
gccaaggagtatcccttcacgctcgacgctttccagcgtgaggcgattgcggcattggaa
gctggagaatcagtcatggtctcggcacacacgtcggcaggcaagactgtggtcgcggag
tatgcgattgccatggctctaagagatcagcagcgtgtgctttacacatctcctatcaag
gcgctgagcaaccaaaagtttcgagagctcgcggaggagttttcggacgtggggctgatg
actggtgacgttacaatctcccccaatgcgtcttgcttggtcatgactaccgagattttg
cggagcatgcagtatcgaggatcagaagtcatgagagaagttgcgtggataatttttgac
gaagttcactacatgagagaccgggaacgaggagtggtgtgggaagaaagcattgtcatg
gctcctaagaacgcccgttttgtttttctatcagcgacggtgccaaatgctaaagaattc
gctgactgggttgcaaaggttcatcaacaaccttgtcacatcgtgtatactgacttcaga
ccaacgcctctacaacactatatttttcccgccggtggggatggtttgtatcttgtcgtc
gatgagcaaggtacgtttcgagaggacagtttctcgaaagcagtgaacgcagttgcaatt
gccgatccaaagaaggacggaaaatggcaaaagcgaaaagaagaaggaaaggacgaacca
agtgacatctggaagattgtgaaaatgattattgcacggcaatatgatccagtgatagtg
ttcagttttagcaagagggattgcgagcatcttgcaatgcagatgtcaaaaatggacctt
aactcagaagatgaaaagaaacttgttgaaggcatatttcgaaatgccatggactcttta
tctgaagacgataaaaagcttcctcaggtctctctggccctgccttatttgaagcgcgga
atcggagtgcatcactcgggcctgttgcccattcttaaagaagttattgagatattattt
caagaagggctcgtaaagtgcctgtttgctacagagacattcagtattggactgaatatg
cctgccaagacagtcgtgttcacgaacgttcgcaagtttgatggtgacaagtttcgctgg
ataaccagcggcgaatatattcaaatgagtggacgcgcagggcgtagagggcttgacaat
tttggcgtatgtatttttatgctagatgaaaagctagaaccagctgttgcaaagcagata
gtgaagggcactgccgatccattgaatagtgcttttcatctcagctataatatgatatta
aatcagatgcgctgtgaagagagtaacccagaagacttacttcgccagtcctttcaccaa
tttcagtctgatcgaagcttaccaatccttgagcaacgcgtgaagaatctggaagaagaa
agagcttctgttcttattgaagaagaggagaagctagcagaatactactcatcggtcaat
cagttgaggaaaataaagaatcagatacgggagattatactcgctcctcgatcttgtctt
ccgtttcttcaacctgggcgtctagtgcggatattcagatctgctgatgcagtggagcaa
cagaatagcgtactaatggagcaagatcctgctgtatggggcgttattatcaactttgag
aaggctcagtcaaaggactcagatgaaggtaagccgaatggcgcacacttgaaatacgta
gtggacgtgctggtgaactgcgtaactgagaaagaaggggacagaccgaaggtggcacgt
cctgtatctctggatgaggatgggcaacctttagttacagcatttcctttgtctcaagtg
gagagccttagtgccgttcggattcgtattccaagagatttgcgtccagctgaagcaaga
gagcagaccttgaggaccgtgctggaagtactgaaaaggtttcccgacggattgcagctt
ttagatcccgaggatgatatgaaggtggaaagcagcgattacaagaagttggtgcgacga
gtggaagcactggaaactctgatagcaaaacacccagttgcaaaatctccaactctaaat
gaacgattgaggctgctccagaagaaggaagatctagccgagaccattcgtgtagcgcgg
aaggaagtgcgtgctgcgtccgctctaatattcaaggacgaactaaaagcgcgtcgaaga
gttttacgtcgtttaagttatgccaccagggacgacgttgtgcaactcaaggggctcgtg
gcctgcgagataagcagcgcagacgagctcattgtcacggagctgatattcaatggtgtt
ttcaaggacgtcacagcagagcaggctgccgcgctactgtcatgcttcgtgtggcaagag
aagacgaaaatggcgaagccgctgtctcaagaacttgctggactgttttcgcagctccag
gacacagccaggcaagttggaaaactccaagtggaatgcaaggtagttccagtcgatgtg
gaggaatacgtgaattcgtttcggccggatataatggagggagtccatgcctggtgcacc
ggaaagagctttctggaggtgttgaaagtggcggaggtgtttgaagggagcttgatccgg
gcgcttagaaggctggaggagcttgtccagcaactggtcacagcctcgaaagccattgga
gaggcagacatggaggccaagttccaggacgcaagcaccaagatgaaaagggacattgtg
tttgcggcgtctctatacctatga
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integrated database retrieval system
