Selaginella moellendorffii: SELMODRAFT_108064
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Entry
SELMODRAFT_108064 CDS
T01496
Name
(RefSeq) hypothetical protein
KO
K12854
pre-mRNA-splicing helicase BRR2 [EC:
5.6.2.6
]
Organism
smo
Selaginella moellendorffii
Pathway
smo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
smo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
SELMODRAFT_108064
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
smo03041
]
SELMODRAFT_108064
Enzymes [BR:
smo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
SELMODRAFT_108064
Spliceosome [BR:
smo03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
SELMODRAFT_108064
Complex C
U5 SnRNP specific factors
SELMODRAFT_108064
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sec63
DEAD
SNRNP200_wHTH
Helicase_PWI
ResIII
Helicase_C
BRR2_plug
AAA_22
AAA_30
AAA_25
Motif
Other DBs
NCBI-GeneID:
9657829
NCBI-ProteinID:
XP_002978166
JGI:
108064
UniProt:
D8S3W0
LinkDB
All DBs
Position
Unknown
AA seq
2164 aa
AA seq
DB search
MAHLGGGAEAHARFKQYEYRANSSLVLTTDTRPRDTHEPTGEPESLWGRIDPRRFGDRVD
HGKPPELLEKKAKASKRKEKENQDDVLRRPSKRSKGSQEESVLSLQEEGTYRPKTKETRA
AYEALLSTIQQQFGDQPQDVLRGAADEVLVVLKNDKMKDSDKKKELEKLLNELGQERFNQ
LVNIGKIIVDFYDGGDAGGAAGEALDDDIGVAVEFEEEDEEEESDVDEVQEESENEEDGQ
ETNEASAMQMGGLDDEDMEEADEGLNVQDIDAYWLQRKITQAYEEIEPQHSQKLAEEVLQ
TLGEGDERDVENRLVMLLDYDKFGLIKLLLKNRWKIVWCTRLARSQDDKERKRIEDEMTE
GGSVLSGILEQLHATRATAKERQKNLERSIREEARKLREEGGDGEKDRRPEREVVLEGGW
QGQRQFLDLKDLAFEKEGLFMANKKCELPEGTYRTMKKGYEEVHVPAMKVKPMEEGEELV
KISDLPSWAQPAFKEMKTLNRIQSRVYETALFTQENILLCAPTGAGKTNVALLTILQELG
SKQESDGTFDLSHTKIVYIAPMKALVAEMVGNLQKRLADYGVVVKELTGDQSLSRQQIEE
THIIVATPEKWDIITRKSGDRAYTQLVKLVIIDEIHLLHDGRGPVLESIVARTLRQVETT
HDMIRLVGLSATLPNYVDVSMFLRVDKSRGLFHFDNSFRPVPLSQQYVGISVKKPLQRFQ
LMNEICYEKVLAVAGKSQILIFVHSRKETAKTAKAIRDSALTNDTLGKFLKGDSASSEIL
RTEAENVKNTDLKGLLSYGFAIHHAGMARADRTLVEELFADGHIQVLVSTATLAWGVNLP
AHTVIIKGTQVYNPEKGAWTELSPMDVMQMLGRAGRPQFDSTGEGIIITGHSELSYYLSL
MNQQLPIESQFISKLPDNLNAEIVLGSVQNAREACAWLGYTYLYIRMLRNPLLYGVNPEV
LETDETLEERRADLIHTAATILDKNNLVKYDRKSGYFQVTDLGRIASHYYISHGTMATYN
EHLKPTMGEIELCRLFSQSEEFKNVGVREEEKLELAKLLDRVPVPVKESLEEPSAKINVL
LQAYISQLKLEGFSLFTDMTFITQSAGRLMRALFEIVLKRGWAQLAEKALNLCKMVQRRM
WSTQTPLRQFKGIPIDVLTKIEKKDYAWERYYDLTSQEIGELIRIPKLGKMIHKFVHQFP
KLELSAHVQPITRSVLKVDLTITPDFQWDEKIHGFVEPFWVIVEDNDGETILHHEYFLLK
MQYVEDDHNLSFTVPIFEPMPPQYFIRVISDRWLKAETVLPVSFRHLILPEKYPPPTELL
DLQPLPVTALREPSFEALYQQFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICGEFA
VLRMLQKNADTGGGKCVYIAPKEALAKERFEDWEKKFADLKVQVVQLTGETAMDLKLLDR
GQVIISTPERWDVLSRRWKQRKQIGQVNLFLVDELHLIGGEGGPVLEVIVSRMRYISKQA
GDKIRIVALSASLANAKDLGDWIGASSHGLFNFSPAVRPVPLEIHIQGVDITNFEARVQA
MTKPTFTAILQHAKGGKPALVFVPTRKHARSTASDLVLYALAGGNSFLQCTEKDLEPLLE
RIRDPELKETLQGGVGYLHEGLSPTEQDIVGELFSAGAIQVCVASSSMCWGMTLTAHLLV
VMGTQYYDGRENAHTDYPITDLLQMMGRASRPLVDSSGKCVILCHAPRKEYYKKFLYEPF
PVESHLDHYIHDHLNAEIVVHTIENKQDAVDYLTWTLMYRRLTQNPNYYNLQGVSHRHLS
DHLSELVESTLNDLESSKCIAVEDDMELSPLNLGMIASYYYIRYTTIELFSNSLTAKTKM
KGLLEILASASEYATLPVRPGEEDIVRKLVNHQRFSVDKPKYSDPHLKANALLQAHFSRH
PVPGNLAMDQREVLLQAIKLLQAMVDVIASNAWLNPALAAMEISQMVTQGLWERDSVLLQ
LPHFTKDLAKKCKERNVETVFDLLEMEDGERRELLGMDDSQLLAIARTCNRFPNIDMAFE
VLDEAEATVGEPVAVQVTLEREVEGNEEVGIVEAPRLAKTREEGWWLVLGDTANNVLLAI
KRVTLQRRNKCKLEFTPQEAGVKNYKLYFMCDAYLGCDQEYDVTIDVKEAAGGGEAGEVR
AMEE
NT seq
6495 nt
NT seq
+upstream
nt +downstream
nt
atggcgcatttgggaggcggtgctgaggcgcacgcccggttcaagcagtacgagtaccgc
gccaactccagtctggtgctgacgaccgacacacggccgcgcgacactcacgagcccaca
ggtgagccggagagcctctggggtaggatagatccgcggcggtttggggatagagtagat
catggcaagccgccggagctcctcgagaagaaggccaaggccagcaagcgcaaggagaag
gagaatcaggacgatgtgctgcggcggcccagcaagcgatcaaaggggtcacaggaggag
agtgttttgtcgctgcaagaagagggaacttatcgcccaaagacgaaagagacgcgggcg
gcatacgaggcactgctcagcacgatccagcagcagtttggggaccagccacaggacgtg
ctgcgtggagcggcggacgaagtgctagtggtgctcaagaatgacaagatgaaagactct
gacaagaagaaggagctggagaagctgctcaacgagcttggccaggagcgattcaaccag
ctcgtgaatatcgggaagatcattgtcgacttctacgatggtggtgacgctggcggtgct
gccggggaggctctggatgatgatatcggcgtggctgtggagttcgaggaggaggacgag
gaagaggagagcgatgttgacgaagtccaggaggagagtgagaacgaggaagatggtcag
gagacgaacgaggcatcagcaatgcaaatgggaggcctcgatgacgaggacatggaggag
gcggacgaaggactcaacgtccaggatatcgatgcgtactggctccagcggaagatcact
caggcgtacgaggagattgagcctcagcacagccagaagcttgccgaggaggttctgcaa
actcttggagagggcgatgagagggacgtggagaacaggctcgtcatgctcctggactat
gacaagtttgggctcattaagttgctcctcaagaacaggtggaagattgtctggtgcact
cggctggcccgatcgcaggacgataaagagaggaaaaggattgaagatgagatgacggag
ggaggttcggttttgtcgggaattctggagcagctccacgctactcgagcgactgcgaag
gagcggcaaaagaatctggagcgtagtatccgtgaggaagcgaggaaactccgtgaagaa
ggtggtgacggagaaaaggatcgaaggccggagagggaggtggtcttggaaggaggatgg
caaggccagcggcaatttctcgacttgaaagacctggcgtttgagaaggagggcctgttc
atggccaacaaaaagtgcgagcttccggagggcacttacaggacgatgaagaaaggatac
gaggaagttcatgttcctgccatgaaggtgaagccaatggaggaaggtgaagagctggtc
aagatatcggacttgccgtcttgggctcagcctgcattcaaggagatgaaaacgttgaat
cgcatccagagcagagtttacgagacggctctctttactcaggaaaatattctcctttgc
gcaccaacaggcgctggcaagaccaacgttgcgttgctcaccattcttcaagagcttggt
tcgaagcaggagtcggatggtacttttgatctcagtcacacaaagatcgtctatattgct
ccgatgaaggctttggtcgctgagatggttgggaatcttcagaagagactggcggactat
ggtgttgtagtgaaggagctcactggagatcagtcgctttctcggcagcaaattgaagag
acgcacatcatcgtagcgactccggagaagtgggatatcatcacccgaaaatcaggcgac
agggcctacactcaacttgtcaagctggttatcatcgacgaaattcatctgctgcacgat
ggccgtggtccagttctggagagtattgtggctcgaacacttcgccaggttgaaacaacg
cacgatatgatcaggctggtgggcttatccgcgacactgccgaattacgtggacgtgtcc
atgttcctgagggtggacaagtcgaggggcctgtttcacttcgacaacagcttccggccg
gtccctttgagtcagcagtacgttgggatatccgtgaagaagccgcttcaaaggttccag
ctcatgaacgagatttgctacgagaaggtgttggctgttgcgggaaagagccagattctc
atctttgtgcactctcggaaggagacggcaaagacagcaaaagctatacgggactcggcg
ctcacaaatgatactctagggaaattcttgaagggagacagcgctagtagtgagatcctg
cggaccgaggcggagaacgtgaagaacacggacttgaaaggccttctgtcgtacggtttt
gccattcaccacgctggaatggcgagagccgacagaactcttgtggaggaacttttcgca
gacgggcatatccaggtgctggtttcgactgcgactctagcttggggagtaaatcttccg
gcccataccgttatcatcaaagggactcaggtgtacaatcccgagaaaggtgcttggacg
gagctaagtcccatggacgtgatgcaaatgcttgggcgtgctggacggcctcagtttgat
agcactggcgaaggcattatcatcactggccacagcgagctctcgtattatctttcactg
atgaaccagcagcttccaatcgaaagtcagttcatctccaagctgccggacaacctcaac
gccgagattgtgcttgggagcgtgcaaaatgcgagggaggcttgtgcgtggcttggctac
acgtacttgtatatccggatgctgcggaacccactgctttatggcgtcaacccagaagta
ctcgagactgacgaaacattggaggagaggagggcggacttgattcatactgcggcaaca
attctggacaagaacaatctggtgaaatatgatcgaaagagtggctatttccaggtgacg
gaccttggccgaattgctagccattactatatcagccacggtacaatggccacgtacaat
gagcacctaaagccaacgatgggagagatcgaactgtgccggttgttttcacaaagcgaa
gagttcaagaatgttggggtcagggaggaagaaaaacttgagctcgccaagttattggac
agagttccggtacctgtcaaggagagtctggaggagccgtccgccaagatcaacgtactg
cttcaagcctacatatcgcagctgaagcttgaaggcttctctctcttcacagatatgacg
ttcataacacagagtgccggacggttgatgcgcgcattgtttgagattgttttgaagcgg
ggctgggctcaactggctgaaaaggctctcaacctttgcaaaatggtccagaggagaatg
tggagcacgcagacaccgttgcggcagttcaaaggcattccaatcgacgttctcaccaag
attgagaagaaggattatgcgtgggagcggtattatgacctgacatcgcaggagatcgga
gagcttatccgcattccgaaacttggaaagatgatccacaagttcgttcatcagtttcca
aagctggagctgagcgcacatgttcaacccatcacaaggtccgtgctcaaggtggacctg
accatcacaccggactttcagtgggacgagaagattcatggctttgtggagccattttgg
gtcatcgtggaggataatgatggcgagaccatacttcaccacgagtatttcctactcaag
atgcagtacgtggaggatgaccacaacctgagcttcacagttccgatttttgagccgatg
ccgccgcagtattttatccgtgtcatctcggacaggtggctgaaagcggagactgtgctt
ccggtttctttcaggcacttgattctacccgagaagtatccacctccaacggagcttctg
gacctgcagcctcttccggtcacagctttgcgggagccttcttttgaagctctctaccag
cagttcaagcacttcaatcctattcagacacaggtgttcacggttctctacaacacagat
gacaacgttcttgttgcagcgccaacgggaagcggaaaaactatctgtggagagtttgcc
gtgctacgcatgctgcaaaagaacgcggacactggaggtggtaaatgtgtctacattgct
ccgaaagaagctcttgcgaaggagcggtttgaggactgggaaaagaagttcgccgacttg
aaagttcaagtggtgcagctgacaggggaaactgctatggacttgaagcttttggacaga
ggccaggtgattatcagcacaccagagaggtgggatgtgttgtcacgaaggtggaagcag
cggaagcagatcggacaggttaatctcttcctggtagacgagcttcacttgatcggtggt
gaaggtggtccggttctggaagttattgtttctagaatgcgttatatctcgaagcaagct
ggagacaaaatccggatagtcgcactgtcggcgtcactggctaatgccaaggacctgggt
gactggatcggagcgagctcccacggacttttcaacttctctccggctgtgcgaccagtt
ccactcgagatccacattcagggagtcgacatcacgaactttgaagctcgggttcaagcg
atgacgaagccaactttcacagccattctccagcatgccaagggtggaaaaccggccttg
gtttttgttcctacgaggaagcatgcacgctctactgcttccgacctcgttctctacgcg
ctggccggcgggaacagcttcttgcagtgcactgagaaggatttggagcccctgctggag
cggataagggatcccgagctcaaggagactctgcaaggtggtgtcggatatctccacgaa
ggcttgtctccaaccgagcaagacattgttggggaactcttcagtgccggagccattcag
gtgtgcgttgcaagcagctctatgtgctgggggatgacacttactgcgcacctcttggtg
gtcatggggacgcagtactacgacggcagagagaacgctcacacagactatcctattacg
gatcttctgcagatgatggggcgtgcaagcaggcctctggtggacagctctggcaagtgt
gtcatcttatgccatgctcctcgtaaggagtattacaagaagttcctgtacgagcctttc
cccgtggagagccacttggatcactacatccacgaccatctcaacgcagagatagtggtg
cataccatcgagaacaagcaggatgcagtggactacttgacatggacgctcatgtaccgg
aggctgactcagaatccaaactactacaaccttcagggcgtgagccatcggcacctttcg
gatcatctctccgagcttgtagagtcgactctcaacgatctggagtccagcaagtgtatc
gcagtggaggacgatatggagctgtcgccactcaacctgggaatgatcgcgtcctactac
tacatacgatacactaccatcgagctcttcagcaactctctgactgcaaagacgaagatg
aaaggcttgctggagatcctggcttctgcgtccgagtacgctactcttcccgtgagacct
ggcgaggaggatatcgtccgaaagcttgtcaaccaccagcgcttctcggttgacaagccg
aagtactcggatccacacctcaaggccaacgcgctgttgcaagctcacttctccaggcat
cccgtcccgggtaatctggctatggaccagcgtgaggtgctgctccaggcaatcaagctt
ctccaggccatggtcgacgtgatagccagcaacgcttggctcaacccggcgcttgcagcc
atggagataagtcagatggtaacgcagggactgtgggagcgagactcggtgctcctgcag
ctcccgcacttcaccaaggatctagcgaagaagtgcaaggagaggaacgtggagacggtg
tttgatctgctcgagatggaagacggggaaaggcgggagctgctgggaatggacgactcg
cagctgctagcaatcgctcggacgtgcaaccggtttccaaacatcgatatggctttcgag
gtgctggacgaggcagaggcgaccgtgggagagccagttgctgttcaggtgacgctggag
agggaagtggaaggaaacgaggaggttggaatcgtggaggctcccaggcttgcaaagacg
agggaagaggggtggtggctagttctcggcgacactgcgaacaatgtgctgctggcgatc
aagagggtgacactgcagcggaggaacaagtgcaagctggagttcactccgcaggaggcg
ggtgtcaagaactataagctctacttcatgtgtgacgcgtacctcggttgcgatcaggag
tacgacgtgaccatcgatgtcaaggaagctgccggcggtggtgaagcgggagaagttcgt
gcaatggaagagtaa
DBGET
integrated database retrieval system
