Selaginella moellendorffii: SELMODRAFT_108429
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Entry
SELMODRAFT_108429 CDS
T01496
Name
(RefSeq) hypothetical protein
KO
K04077
chaperonin GroEL [EC:
5.6.1.7
]
Organism
smo
Selaginella moellendorffii
Pathway
smo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
smo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SELMODRAFT_108429
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smo03019
]
SELMODRAFT_108429
03110 Chaperones and folding catalysts [BR:
smo03110
]
SELMODRAFT_108429
03029 Mitochondrial biogenesis [BR:
smo03029
]
SELMODRAFT_108429
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
smo04147
]
SELMODRAFT_108429
Enzymes [BR:
smo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.1 Enzymes altering polypeptide conformation or assembly
5.6.1.7 chaperonin ATPase
SELMODRAFT_108429
Messenger RNA biogenesis [BR:
smo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
SELMODRAFT_108429
Chaperones and folding catalysts [BR:
smo03110
]
Heat shock proteins
HSP60 / Chaperonin
SELMODRAFT_108429
Mitochondrial biogenesis [BR:
smo03029
]
Mitochondrial protein import machinery
Matrix
Other matrix factors
SELMODRAFT_108429
Exosome [BR:
smo04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
SELMODRAFT_108429
Exosomal proteins of other body fluids (saliva and urine)
SELMODRAFT_108429
Exosomal proteins of breast cancer cells
SELMODRAFT_108429
Exosomal proteins of colorectal cancer cells
SELMODRAFT_108429
Exosomal proteins of bladder cancer cells
SELMODRAFT_108429
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Cpn60_TCP1
Motif
Other DBs
NCBI-GeneID:
9658169
NCBI-ProteinID:
XP_002978237
JGI:
108429
UniProt:
D8S490
LinkDB
All DBs
Position
Unknown
AA seq
557 aa
AA seq
DB search
ALQEVSKAQWVRRYSAKEIKFGVEARALMLQGVEQLADAVKVTMGPKGRNVVIDQGFGSP
KVTKDGVTVAKSIDFKDKLKNVGASLVKQVANATNDVAGDGTTCATVLARAIFAEGCKSV
AAGMNAMDLRRGISSAVESVVENLKSKAKMISTSEEIAQVGTISANGDREIGDLIARAME
KVGKDGVITVSDGKTLHNELEVVEGMKLDRGYISPYFINNAKTQKCELENPVILIHDKKI
STVSAIMPVLELVVKEQRPLLIVAEDVDGEALATLIVNKLRGGFKCCAIKAPGFGDNRKS
CLQDLAVLTGGQLVSEDVGIKLEKVDRSMLGSAKKVTISKDDSIVLDGLGDKKEIEERCE
QIREAVKSSTSDYDKEKLQERLAKLSGGVAVLKIGGGSEAEVSEKKDRVTDALNATKAAV
EEGIVPGGGVALLYASRDLDKLETPNFDQKVGVQIIQSALKMPTYTIAANAGVEGAVVVG
KLWEQNDYNLGYDAAKGEYVDMVKAGIIDPVKVLRTALGDAASVSSLLTTTEAVVYDLPK
EEKAAAGGGMGGHDLDY
NT seq
1674 nt
NT seq
+upstream
nt +downstream
nt
gcattgcaggaggtgagcaaggcgcaatgggtgaggagatactccgccaaggaaatcaag
tttggagtggaggctagggctcttatgctccagggcgtggagcagctcgctgatgccgtc
aaagtaaccatgggtcccaaggggcgaaacgttgtgatcgatcaaggctttggttctccc
aaggttaccaaggatggtgtgactgttgccaagagcatcgacttcaaggacaagctgaag
aacgttggtgctagcctcgtgaaacaagtcgccaacgctaccaacgatgtggcaggagat
ggaactacttgcgcaactgtgcttgctcgcgcaatttttgcagagggttgtaagtctgtg
gcggctggaatgaatgccatggacttgcgccgtggtatcagctcagctgtggaatccgtg
gtggaaaatctgaagagcaaggcgaagatgatcagcacatcagaggagattgctcaggtc
ggtaccatttcggcaaatggtgacagggaaatcggtgacctgattgctagagccatggag
aaggtcggcaaagatggtgtcatcacagtatcggatggcaagaccttgcacaacgagcta
gaggttgtggagggtatgaaattggacaggggatacatttccccctatttcattaacaac
gctaagacacagaaatgcgaacttgaaaatccagttattctgattcacgacaagaagatc
tctactgtcagtgccatcatgcctgttttggagcttgtcgtgaaggaacaaagaccactt
ctcattgtggcagaggacgttgacggcgaggctctggcaactctgattgtcaacaaactc
cgaggtggttttaagtgctgcgccatcaaagcccctggatttggagacaacagaaaatcg
tgtctgcaggatcttgccgtgctcacgggcggtcagcttgtcagcgaagatgtaggtatc
aagcttgagaaggtcgatcgttccatgcttggttcagcaaagaaggttacaatctcgaaa
gacgacagcattgtcctggatggccttggcgataagaaggaaatcgaggaaagatgcgaa
cagatcagagaagctgtgaagtctagcacatcagactatgacaaggaaaagctccaagaa
aggctggccaagctctctggaggtgtagccgtcttgaagattggaggaggtagtgaagcg
gaagtcagtgaaaagaaggatcgggtgacggatgcgctgaatgctacaaaggctgcagtg
gaggagggaatcgtgccaggtggtggagtcgctcttctctacgcgtctcgcgatcttgac
aagctggagacgcccaacttcgaccagaaagtgggagtccaaatcatccagagcgcgcta
aagatgcccacgtatacaattgctgccaatgccggagtggagggagcggtcgttgtaggc
aagctatgggaacagaatgactacaacttgggttacgacgcggcgaaaggtgaatacgta
gacatggtaaaggccgggattattgaccccgtgaaggtgttgagaactgctctgggtgac
gccgccagtgtttcttcgttgctgacaacaacagaggctgtggtgtatgatcttccaaag
gaggagaaggccgcggctggaggaggcatgggtgggcatgatttggattactag
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