Selaginella moellendorffii: SELMODRAFT_109010
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Entry
SELMODRAFT_109010 CDS
T01496
Name
(RefSeq) hypothetical protein
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
smo
Selaginella moellendorffii
Pathway
smo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
smo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SELMODRAFT_109010
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smo03019
]
SELMODRAFT_109010
Messenger RNA biogenesis [BR:
smo03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
SELMODRAFT_109010
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
SELMODRAFT_109010
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
DUF5965
Motif
Other DBs
NCBI-GeneID:
9653728
NCBI-ProteinID:
XP_002978422
JGI:
109010
UniProt:
D8S593
LinkDB
All DBs
Position
Unknown
AA seq
824 aa
AA seq
DB search
MGATRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTENANQKEKFEADLKKEIKKLQRYRD
QIKTWIQSSEIKDKKVAASYEQALVDARKLIEREMERFKVCEKETKTKAFSKEGLGQLPK
TDPKEKAKAETREWLNNMVDELNSGIDAFETEMEGLAVKKGKTRPPRLIHLEESTARHKS
HVMKLELILRLLDNDELSPEQVNDVKELVEDYLERNQEDFDEFADVDELYSQLPLDKMEA
MEALDLAPNVASALVVAAAAAAAAAAAVAAQVPPPLQPVDDITLEDTSARTSPVPITASS
LSPTGSALLQTTGSDVTSSPSASGITQRTVATPPGLIPRPTAKGAVLQSSPAKVKEDEVT
SLAGRRVGPGIGDGGLSRSFGRQTAVPASPVAQPSPTVSSSPTVPEAAKRNIADDRATSG
VAPQLSPLSTPNKAPFGGKVGDSSPTSEAPGTPETAIGNRLGQWRESSQFHGRPEIVPDQ
KQKFLQKLQQANQQTQHLPPHLTSPVQKQTPQPSSLLHQVTRYWFWKNLLKVLLASGSFA
AAATTAAFSSKYAISYNAVPQPDAIQTRTVEQQSPLAAKLADDNTTEANVPFPRNLSLSE
DDLKNADTFDVPVGGPGTLAELSQLSRDADFTPGQQVPSTPTSSVPGVIGRKSNTELGAI
GDNLSAASSSMAHDSVYNLQMLEAAYRHLPLPKDSERPRNYTPRNPAITPPSYPQAPAQS
IIDNPALWEKFEVDVLFYAFYYHQGTYQQYLAARELKKHSWRYHKKYNTWFQRHEEPKVT
TDEFEQGTYVYFDFHIVDDIQQGWVQRIKTEFTFEYSFLEDELV
NT seq
2475 nt
NT seq
+upstream
nt +downstream
nt
atgggcgcgacgcggaagctccagggcgagatcgatagagttctcaagaaggtccaggag
ggcgtggatgtcttcgacagcatctggaataaggtgtatgataccgagaatgcaaatcaa
aaggagaagtttgaggccgatctcaagaaggaaatcaagaagctacagcgatacagggac
cagattaagacgtggattcagtccagtgaaatcaaggacaagaaggtagcagcgtcttac
gagcaggcgctggtggatgcccggaagctcattgagcgagagatggaacgattcaaagtt
tgcgagaaagaaacgaaaacgaaggcgttttcgaaagaaggtctaggccagcttccgaaa
actgatccaaaagagaaagcaaaagccgaaacacgagaatggttaaacaatatggtggat
gagttgaattcgggtattgatgcgtttgagacagagatggaagggctggcagtgaagaag
gggaaaactcggcccccccgcttgattcacttagaagagtctactgcccgtcacaaaagt
catgtcatgaaactagaactcattttgcgacttttggacaatgacgagctaagcccagag
caagtaaatgacgtcaaagagcttgtggaagattacctcgaaaggaatcaggaggatttt
gatgaattcgcagatgtggatgaactttatagtcagcttcctcttgataaaatggaggcc
atggaagctctggaccttgctccgaatgtggcttcagcacttgtggttgctgccgctgcg
gcagctgcagcagctgctgccgttgctgctcaagttcctccacctttacagcccgtggat
gatattacattggaagacacatccgcacgaacatctcccgttccaatcaccgcaagctcg
ctgtcacccacaggatcggccttactgcagactactggaagcgacgtaacttcatctcca
agcgcttctggtatcacgcaacggactgtggcaacacctcctggtttgattccacggcca
acagccaaaggtgcggtcttgcaatcatcacctgcaaaagtcaaggaggacgaggtgacg
agccttgccgggcgacgagtaggaccaggtattggagatggaggactttctcgaagcttt
ggcaggcaaacagctgttccagcttctcctgtcgctcaaccttccccaacagtctcgagc
agtccaacagtgccggaagctgcaaaacggaatatagctgacgacagagccacttctgga
gtcgcaccgcagctcagtcctttgagcacgccgaataaagctccttttggaggaaaggtt
ggagattccagtccgacaagtgaggctccgggaaccccagaaacagccattgggaataga
cttggccagtggagagaatcgagccagttccatggaagaccagagattgttccagatcaa
aaacaaaagttcttacagaagttgcagcaggccaatcaacagacacaacatctccctcca
catcttacaagtccagttcaaaagcaaacgccccaaccatcctctttgcttcatcaggta
accagatactggttttggaaaaacttgctcaaggtattactcgcatcaggctcttttgca
gcagcagcaacaacagcagctttctcctctaagtacgcaatctcctacaacgccgtgccc
caacctgatgcgattcaaacaaggactgtggagcagcagagtccacttgcagctaaactt
gcagacgataacacgactgaagccaatgtaccattccccagaaatttatctctgagcgaa
gatgacttgaagaatgcagacaccttcgacgttccagttggtggcccaggaacgctagcg
gaacttagccagttgtcgagggatgcagatttcacgccagggcaacaagtcccgtcaaca
ccaacatcatcagtacctggtgtgatcggtcggaagagcaacacggaacttggagccata
ggagacaacctctcagctgcaagtagcagtatggctcacgacagtgtgtacaatttgcag
atgctagaagctgcttatcgccaccttccgcttccaaaagactcagaacggccacgcaac
tacaccccgaggaacccagctatcactccgcctagctatcctcaagcaccagcccaatcc
atcatcgacaaccctgcgctttgggagaagtttgaggtggacgtcctgttctatgcattc
tactatcatcagggaacgtaccagcagtatctagccgcaagggagctaaagaaacattcg
tggagatatcacaagaagtacaacacatggttccagcgccacgaggagccgaaagtcaca
acagacgaattcgagcaaggcacatacgtttacttcgacttccacatcgtggatgatatt
cagcaaggctgggtccagagaatcaagaccgagtttacattcgaatacagcttcctcgaa
gacgagctggtgtaa
DBGET
integrated database retrieval system