Selaginella moellendorffii: SELMODRAFT_114908
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Entry
SELMODRAFT_114908 CDS
T01496
Name
(RefSeq) hypothetical protein
KO
K08873
serine/threonine-protein kinase SMG1 [EC:
2.7.11.1
]
Organism
smo
Selaginella moellendorffii
Pathway
smo03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
smo00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
SELMODRAFT_114908
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
smo01001
]
SELMODRAFT_114908
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smo03019
]
SELMODRAFT_114908
Enzymes [BR:
smo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.11 Protein-serine/threonine kinases
2.7.11.1 non-specific serine/threonine protein kinase
SELMODRAFT_114908
Protein kinases [BR:
smo01001
]
Serine/threonine kinases: Other
PIKK family [OT]
SELMODRAFT_114908
Messenger RNA biogenesis [BR:
smo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
SELMODRAFT_114908
mRNA cycle factors
Common to processing body (P body) and stress granule
SELMODRAFT_114908
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PI3_PI4_kinase
SMG1
FAT
HEAT_ATR
FRB_dom
OmdA
BDI_1685-like_C
Motif
Other DBs
NCBI-GeneID:
9648150
NCBI-ProteinID:
XP_002981652
JGI:
114908
UniProt:
D8SEL2
LinkDB
All DBs
Position
Unknown
AA seq
2922 aa
AA seq
DB search
MLLQTLASQVRAAHTFDDHGGGGGAAVAAAALPPPPLLPSVQVCTLLKMNLQMLAAQGLA
LHPSAALRLLETGSPFSNLRLHPCQAITSSVAATYVYFLQHGCEKVAVESALCLKREIET
LSRSLAGKKGAMGLVEAEVVSLLKFDLLLLLMSVRANAAESQVQKVKNIINFVLEKSDPF
EAPVRWHSELQLAVVQALRRVFSWIVPWEVDAEGAMEFFGKCSVAMARGLEKEVASLTVR
IEVLEWIGEFPKWFRKLEGMTLLSGSLFAALVATASDEENTVRLQASKTFGALLRHKCLS
SSQVYSVASAAFEQLGDPDPGIQAAFCEVLATCALGALWVHGWNSDLDAKEEGNFVTKRP
LEREKHWRSVLSANRFALQLSPPQVVCILNYISQRPQSLPAGWQQRLVFNCLKTKSADDK
KQGDGLDRKEDCSVVEDAARFDLVESWCCSSNMAAAWFIIQELARHCITVRFRTHLGGPT
QTFAALERMLLDLPQLVQSESSAANTSELLPMRLLLELVDSLQRNIYNAYEGSLVLEAPS
FSSGLFFRANKKVCEEWFARIREALVNASSVIQCHFGTAQHALFRLHDLRPMALAALRDL
PRSQAADGGLTLKVKLQQDVFRVLRHGSLALCKLHESDSILGLQAWAVTAFAGLILEEVH
KVSSPLGPVGWMNGLAFEARGEFERAAAHYSQLFQSEETLSVLGADGVQFIIGRIVESYV
SLSDWEALEGWLQELQVLRAKHAGKSYTGALTTAGIDMNSIHALSRFDASDMEGTWGYLD
LTPQSNNEITIDPRQALQRSEQMLLQAMLRKDSEVEDAAREMKLARAMLDGPLLVSSLDD
LSDAAPYLTQLHCIEVVESWKGPSERQEGIQDISLKYFNHPADEVYQDCHLWLKVLRVYK
TVFPHAGVTSTLRRQLVRLARKHGNFRLARRMLKEMDGENWDSKVAAYENSLLHFSEGQH
AKAMTELWPLVKNFIAESERALPFEGDVMAATSCLKLGSWLQKRRTENDFAGLLSEMDLT
SGSGGMILEEVTGAAVKAATLHCPSFGKAWFSYASWCYSLARCGFFGNETLSKASIFPQV
LEKELISSSPSLTDEEMMKIQAMIKSLGGELEDAILEMLVKRVVFLLEAAAREAGFEKWD
GESLSLQLRQELQVLKPSSVPGLINELLQVWWGVRKRRISLFGYAAHGFLKYMSLSNRTT
VRSNPLKQDSTLSASLFVLNILQTCGVELEDILQQGLSSIPPSPWKEITPQLFACVSSHP
EAKVRKQLEGLLMSLANVYPWAIVYPTLVHFNASEGQSSEELERILNSLSKLHPKVVNDV
RLMIAELGSITFLWEEQWLTTLQDLHADVSRRIITLKEEAARIAENQTLSPDEKTKINAA
KYAAIMAPVSYALERRLTLTSRPAETPHEVWFQEHFGGQLRAAITTFKTPPGGNITLNDV
WKPFDAIAASLSNHHKRSAVVLQDVSPRLAALTHSDAPMPGLEFPDADLVTVANFNDQIT
ILATKTKPKKVSVTGSDGQVYNYLLKGREDLRLDARIMQLLRASNKMLRASSATRREGLA
VKCYSVTPISGRAGLIQWVDNVTSLYSVYKAWQLRQQAAQLSSNAVSGAPPPLPRPSDMF
YGKIIPALKEKGLRKVISRRDWPQDVKRKVLLDLMKETPRQLLYRELWCASDGLKGLNKK
IKRFSGSVAVMSVIGHVLGLGDRHLDNILIDFSSGDVVHIDYNICFEKGRRLKVPEIVPF
RLTQTIQNALGPTGVEGFFRASCEAVLSVLQKNKEVILMLLEAFVWDPLVEWMRGDGHDE
ATIGGEERKGMELAVSLSLFASHVQENRVALQEHHDQLLRTLPTIPSTLQSWAAGYENFE
RCSTLAYHINQKKYAAENAEVAARNLLAEASGSLEKTHVTYEIQAREFAQSKARTAEAAR
ETTQWIEQRSRVLDSLRTDTAPELQALGQLTHSTDAVSLLQAVVASGVALTVLPEPTQVH
FREVDRDISQFTSARHEALLHARATLQAYSLALQRLLPGNYYTTSYVHSWAKILQLLSMQ
VTPEVLGVTKRQAIDITAGGRGDHDDVICQKHEKLRSHVELLGEEVQKLEQGRLQLEESV
DPDAEKRAKDKLMGIFLRSLQQGKKDEDDAGLYDFEERRLKVILVLQSAASTIYSEIGNH
AANLQGIGMEESIRRWCFPELEGLVERAVLVSDVLNELQQFSGKATGYRANPWDSNSSFT
AELKGFTDCLAGIDHLVKQMIGVVLPEAVKAALSQDPAVMDAFASLSQIRGAIDTTLEKV
AEIEMQKSALLELERTYPDRLEELVKRKTFLEEAAAGGKDDLSWEEAEELASQEDLCREQ
LETLQKAWSQRSAQASAVLRMEGLVRSALASADQRFEALVALDRDDLHLMRGKVLLAAFA
KLFSGLESLDAALRRVPVAKTTQKTFFVWKVYVMDILLDSCVRDASNDLSLSLDQVISQH
KRRLEAQLQGVLDLYLRERVSPAFLDIILKEATISSFADNSDSSREGEAAKKAVKLLREY
CDVHETVRAAKTAAFALKIQADEAKQSLQNAQIEIAQMEWLHETVLLPRVQFVAMPSGPY
PEKSTSIRWWSRKQILDNIRNSIAAISRATEGLQKAERASVSAEEQLERTMAWASNRAGT
SQEFRERLQRRQQLLWTGQEHATSTVRLCVTVLEFEASREGYLESSSSSSSSDGKSWQQS
YQSLILRLEAAYIAFTSCDMEWKAAQKALEAASANLSGVLRERQLVFSESESSGDHCAAE
LQSIFLQLRQLTLEAAGAVNAFCKGVRSHSALTSEGAVMLDEARADGASDVHSLAKEAIT
ERQSLISDLKKVHAAVAPLELLLPSTANAMSADLDVKAVIKSGQSPTLQSLDLKIKESLA
DLPLHVSSVLDAAQKLHSALTSLGRAASVDAGTLNKASPNVS
NT seq
8769 nt
NT seq
+upstream
nt +downstream
nt
atgctgctccagacgctcgcctcgcaggtgagggccgcgcacacattcgatgatcacggc
ggcggcggtggtgcggcggtggctgctgctgctctgccgccgccgccgctcctcccatcg
gtccaggtatgcacgctgctcaagatgaatctccagatgctcgcggcgcaggggctggca
ttgcatccctcggctgcattgcggctgctggagacaggatcgccgttttcgaatcttcgc
ctccacccctgtcaggcgatcacaagctccgtggcggcgacctatgtgtatttcctccag
cacgggtgcgagaaggtcgctgtggagtcggcgctgtgcctgaaaagggagatagaaact
ttgagcaggagcttggcggggaagaagggggcgatggggcttgtggaagccgaggtggtt
tcccttctcaagtttgatctcttgctcctgctgatgagcgtgagagcaaatgccgcggag
tcacaggtccagaaggtgaaaaacatcatcaacttcgttctcgagaagtctgatcctttt
gaagctcccgttcgctggcactcggagctccagttagcggtggtccaggccttgcggaga
gttttctcctggatagttccttgggaggttgatgccgagggagccatggagttcttcggg
aaatgcagtgtggctatggctcgtggcttggagaaagaggtggcaagcttaaccgtgagg
atagaggtgctggaatggatcggcgagtttccaaagtggtttaggaagctggaaggtatg
actctcctcagcggcagcttgttcgcggctttagtggctactgcttccgacgaggagaac
acagtgaggctgcaagcttctaagactttcggtgctcttcttcgccacaagtgcttgagc
tcttctcaggtttactccgtggcgagtgcggcgttcgagcagcttggggatcccgacccg
ggcatccaagctgcgttttgcgaagtcctcgcgacgtgcgccttgggtgcgctgtgggtg
cacggatggaactcggatttagatgcgaaggaagaggggaacttcgttactaagaggccg
cttgaacgtgaaaaacactggagatcggtgctatcagcgaaccgtttcgcgctacaattg
agcccgccacaggtggtttgcatcctgaattatatatctcagcgtccacagagcttgcca
gcggggtggcagcagcgtctggttttcaactgcttgaagaccaaaagtgccgacgacaag
aagcagggtgatggactggatagaaaggaagattgtagtgttgtggaggacgctgcccgt
tttgatctggtggagagctggtgctgtagtagcaacatggctgctgcttggttcattatc
caggagctagctcgtcactgcatcactgtgaggtttcgtactcaccttggaggaccaacg
cagacattcgcagctctcgagcgaatgctgctggatcttccccagcttgtacagtcggaa
tcgtccgcagccaacacgtcagagctgctaccaatgagactccttttggagctggttgat
agcttacagaggaacatctataacgcctacgaaggctcactagttttggaggccccgtcc
ttctccagcggcctcttcttccgtgccaacaagaaggtttgcgaggagtggtttgccaga
atccgggaagccttggtgaacgctagcagcgtgatacagtgtcactttgggacggcccag
cacgctctctttcggctgcatgacttgaggccgatggcactagctgcgctgcgggacttg
ccgcgtagtcaagctgctgacggcggcctgaccttgaaggtgaagctccaacaggacgtt
ttccgtgtgcttcgtcatggatctctagcactatgcaagctgcacgagagcgactccata
cttggacttcaagcgtgggcagtgacggcgttcgctgggttgatccttgaggaagttcac
aaagttagctctccgctggggccggtcgggtggatgaacggattggcttttgaggcgaga
ggagagtttgagagagctgcagcacattactcgcagctcttccagtccgaagaaacttta
tctgttctaggcgcggacggagtgcagtttatcatcggcaggattgtggaaagctacgtc
tcgctctcggactgggaagctctagaaggctggctccaggagctgcaggttttgcgcgca
aagcatgcgggaaagtcgtacacgggagccctgacgactgccggtatcgacatgaactcg
atacacgcactgtcccgtttcgacgcttctgacatggaagggacttggggatacttggac
ttgacacctcagagcaacaacgagattactatcgatcctcgtcaggcactccagagaagc
gagcagatgctgttacaggccatgctgaggaaggatagtgaagtagaagatgccgctcgg
gagatgaagcttgctagagctatgctggacggaccgttgctggtatcttcgctcgacgac
ctcagtgacgctgctccgtatttgacacagcttcactgcattgaagtcgtggaatcttgg
aagggaccgtctgaacgccaggaagggatacaggatatctcgctgaagtatttcaaccat
cctgcggacgaagtgtaccaagactgccacttatggttgaaggtgttacgtgtttacaag
acggtctttcctcacgcgggcgtcacttcgacgttgcgacggcagttggtccgattggcg
agaaagcatggcaacttccgacttgctaggagaatgctgaaagaaatggatggcgagaac
tgggattcaaaggtagcggcttacgagaactccttgcttcacttttccgagggccagcat
gcaaaagccatgacagagctgtggccgctggttaagaacttcattgccgaaagcgaacgg
gcacttccattcgaaggtgatgttatggctgcaacgtcgtgcttaaaacttggttcctgg
ctacaaaagaggcgaacggagaatgattttgccgggttgctgtcggagatggacctgacc
agtggatctggtggcatgattttggaggaagtcactggcgcagcagtgaaagcggcaacg
ctccattgtccgtcttttggaaaggcctggttttcttatgcttcgtggtgctactcactc
gcaaggtgcggttttttcggcaatgagacgctgtcaaaggctagcatctttccgcaagta
ctggagaaagagctgatttcaagttcaccttccttgacagacgaggaaatgatgaaaatt
caggcgatgataaaatctcttggtggtgaactagaggacgccatcttggaaatgctggtg
aagcgggtagtatttttgctggaagcggcagcaagggaagcaggctttgaaaaatgggat
ggagagtctctcagtttgcagctgcgccaggaactacaggttctcaagccgagcagcgtc
ccgggccttataaatgagctcctacaggtttggtggggtgttcgaaagagaagaatatcc
ttgtttgggtacgctgctcacgggtttctgaagtacatgagcttgtcgaatcgaaccacc
gtgagatccaacccgctgaaacaagactcgactctgagcgcttcgttgtttgtgctaaat
atccttcagacttgtggagtggagcttgaagatatacttcagcagggactgtcctctata
ccgccatctccatggaaggaaatcacgcctcaactttttgcatgcgtaagcagtcatcca
gaggctaaagtgaggaagcagctcgagggactgctaatgagccttgcgaacgtgtatccg
tgggctatagtttatccgacacttgtacattttaatgcctcagagggccaatcgtccgag
gagttggaacgcatcttgaactctctgtcaaagttgcatccgaaagtagtgaatgacgtg
cggttgatgatagctgagctcggatcaataacgtttctttgggaggagcaatggctgact
acgcttcaggatcttcatgcagatgtgagtcgtcgaatcatcactttgaaagaagaggcc
gcaagaatagctgaaaatcagactcttagccccgacgagaagacaaagataaacgcagcc
aagtatgcagcaatcatggctccagtatcgtatgcattggagcgacggctcactcttaca
tcgagaccagcagaaacgccacatgaagtctggttccaagaacactttggtggccaactc
agagctgcaatcacaacgtttaagacgcctccgggtgggaacattactctaaatgacgtc
tggaagccatttgacgccatcgcagcatctttatcaaatcatcacaaaaggtcggccgtg
gttttgcaagacgtatctccacgcctcgctgccttgacgcactcagatgcgccaatgcca
ggccttgagttcccagatgcggacttagtaacggtggcaaacttcaacgaccagattacg
atcctagcaacgaaaacaaagccaaagaaggtctctgtgacgggatcagatggtcaagtt
tacaactatctgctcaaaggaagggaggaccttaggctggatgcgagaatcatgcagcta
cttcgcgcttcaaacaagatgctacgggcgtctagcgctacgagacgtgaaggcttggct
gtcaagtgctactccgtgacgccgataagtggtcgtgccggcttaattcagtgggttgac
aatgtgacgagcctgtactcggtttacaaggcttggcagcttcgccaacaggcagcacag
ctctcatcgaatgctgtctcaggtgctcctccacctctgccacgccccagcgacatgttc
tacgggaagatcattccagctttgaaagagaagggactgcgaaaagtcatatcccggaga
gactggccacaggatgtcaaaaggaaagtcttgctggatcttatgaaagagacaccgagg
cagctactataccgagagctttggtgcgcaagcgatggattaaaaggattgaacaaaaaa
attaagagattctccggcagcgttgcggttatgagtgtgattggacacgttcttggctta
ggcgatcgtcacctagacaacattctaattgattttagctccggagacgtggtgcatatc
gactacaatatctgttttgaaaagggtcggaggctgaaagttcccgagatcgttccattt
cgactgacacagactatccaaaatgcgcttgggcctactggtgtggaaggcttctttcga
gctagctgcgaagctgttctgagcgttctacagaagaacaaagaagtgatacttatgctg
ctggaggcatttgtatgggatcctttggtggaatggatgaggggagatggtcacgatgag
gccacgattggaggtgaagaacgtaaaggcatggaacttgctgtgagcctcagcttattt
gcttcacacgttcaggagaatcgtgttgcacttcaggaacaccatgatcagttactgcgg
acgctccccacaataccctctactcttcagagctgggcagctggatacgaaaactttgaa
agatgctcgactcttgcctaccatataaaccagaaaaagtatgctgctgaaaacgcggag
gtcgctgctaggaaccttttagctgaagcctctggttctctagagaagacacacgtgaca
tacgagatacaggctcgcgagttcgcccagtccaaagcacgtactgcagaggcagctaga
gaaaccacacagtggattgagcagcgcagcagagttctcgattctctccgaacggacaca
gctccagaactccaggcactgggacaactgactcattcgacagacgctgtttccttgcta
caagcagtagttgcgtccggagtagctttgacagtcctgcccgagccgacacaagtccac
ttcagagaggttgacagggacatttctcagttcacatcagcgcggcacgaagctttgctg
catgcccgagcaactctgcaagcctattctctagcgttgcagaggcttctgccagggaac
tattatacaacgagctacgtacatagttgggcgaagatactccagttgctaagcatgcaa
gtcactccggaggtgctgggcgtgaccaaacggcaagcaatagacattactgcgggagga
cgtggagatcacgacgatgttatttgccagaaacacgagaaactgaggtcacacgttgag
cttctcggcgaagaagtccagaagctagagcagggacgtctacaacttgaagaatcagtc
gatccggatgcggagaaaagagccaaggacaaactcatggggatttttcttcgtagcctc
cagcagggaaagaaagatgaggatgacgcgggtttatacgatttcgaggaaaggcggctc
aaagttattttggttcttcagtctgctgcatcaactatttacagtgagattgggaatcat
gcggctaatcttcaaggtattggaatggaggagtccatacgaaggtggtgctttccagag
ctcgagggactagttgagagggctgtcctcgtctcggacgtattgaacgagcttcaacag
ttcagtgggaaggctactggatatcgtgcgaatccgtgggactcaaactcgagttttact
gcagagttgaagggctttacagactgtcttgctggtattgatcacctcgtgaagcagatg
ataggcgtggtgcttccagaggctgtgaaggctgctctttcacaggatccagccgtcatg
gacgcgttcgcatctttatcccagatacgaggagctattgacacaactcttgagaaggtg
gcggagatagagatgcagaagtcggctttgttagaactcgagagaacttatcctgacagg
ctggaagagcttgtgaagcggaaaacattcctggaagaggcagctgctggtggcaaggat
gatctttcctgggaagaggctgaggagcttgcaagtcaggaagatctctgccgagagcaa
ctggagacgttgcaaaaggcttggtctcaacgcagtgcacaggcttcagctgtgttaaga
atggaaggactcgtgcgatcagccttagcgtccgcagaccaacgtttcgaggcactagta
gcactggacagggatgatcttcacttgatgaggggaaaggttctcttggcagcttttgcg
aagctgttctctgggcttgagtcgctggatgccgctctgagaagagttccagttgcgaag
acaacgcagaagactttcttcgtgtggaaggtttacgtgatggacattcttctggactca
tgcgttcgtgacgcttccaacgatttgagtttgagtttggatcaagttataagccagcac
aaaagacgactagaggctcaacttcagggcgtgctggacttatatctgagagaacgcgtc
tcgccagcctttctggacattattttgaaggaggctaccatctcgagttttgctgacaat
tccgacagttctagagagggggaggctgcaaagaaagctgtgaagctacttcgagaatac
tgtgatgtccacgaaacagtccgagcggcaaagactgcagcctttgctctgaagatacag
gcggacgaagcaaaacagagcctccaaaatgctcagatcgagattgctcagatggagtgg
cttcatgagaccgttttgctacctcgcgtccagttcgttgccatgccatctgggccttat
cccgagaagtcgacgagcattcggtggtggagtagaaagcagatattggacaacatacga
aactcgatagctgctatctcgagagctactgagggcttgcagaaagcggagcgggcaagt
gtgtccgctgaagagcagctagaaaggacgatggcatgggcttctaatcgtgcaggtact
tctcaggaattccgtgaacgtcttcaaagaaggcagcaacttctctggactggtcaagag
cacgccacgagtaccgtgagactttgtgttacagttttggagtttgaagcttctcgcgaa
ggctacctggagtcaagctcgagtagctcatctagcgacgggaaatcctggcagcagtct
taccagagcttgatcttgcggctggaggctgcctacattgcgtttactagctgtgacatg
gaatggaaagccgctcaaaaagcgttggaagccgcgagtgccaatctatctggtgtacta
agagagcgccaacttgtatttagcgaatccgagtcgagtggagatcactgtgcagctgaa
ctacaatccatattcttacaactaagacaactcactcttgaagctgccggggctgtgaat
gcattttgcaagggtgtgcgaagtcattcagctcttacctccgaaggtgccgtcatgctt
gatgaggcaagagcggatggagcgagtgatgtgcattccctcgcgaaagaagctatcaca
gaaaggcagagcctaataagtgatcttaagaaggtgcatgctgctgtggcgcctttggag
ttgttgcttccatcaacagcaaacgccatgagcgccgacctggatgtcaaggcggtcatc
aagtcggggcaatcgcctacgttgcaatctttggatttaaagatcaaggagtctctcgca
gatttgcctctgcacgtctccagcgttctcgatgccgcacaaaagctgcactcggctctt
actagcttggggcgtgctgcaagtgtagacgccggtactctcaacaaggcaagtccaaac
gtttcttaa
DBGET
integrated database retrieval system
