Selaginella moellendorffii: SELMODRAFT_115934
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Entry
SELMODRAFT_115934 CDS
T01496
Name
(RefSeq) hypothetical protein
KO
K12600
superkiller protein 3
Organism
smo
Selaginella moellendorffii
Pathway
smo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
smo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SELMODRAFT_115934
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smo03019
]
SELMODRAFT_115934
Messenger RNA biogenesis [BR:
smo03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
SELMODRAFT_115934
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR_1
TPR_2
TPR_17
TPR_11
TPR_14
TPR_8
TPR_12
TPR_CcmH_CycH
TPR_19
TPR_16
Motif
Other DBs
NCBI-GeneID:
9635936
NCBI-ProteinID:
XP_002982125
JGI:
115934
UniProt:
D8SFV6
LinkDB
All DBs
Position
Unknown
AA seq
1076 aa
AA seq
DB search
GRVYWETEDMKEKAAHEFVESAKLDPSRADTFIYLGHYYRELAKDLRRAVRCYQKAVALD
AENEATGEMLCDILDHGGQFSMEKNICEEASKKSPRAFWAWRRLGFIQVAERKWSEAISS
TQYGLRGYPTDSRLWEALALSYKRLGMLTAASKAFGRAFDLDNSSLFAALEMGAIDLALS
AFSKVFCSSTAYREALRISPGELIAIHGLVSSLLGQARECFTQGAFWWCATILKATSFLT
QGSQEAIDLAIGSRSMYGHLLMYAQSLPFESADPQRSWQEAVDSWYSERVDAANNAVHAY
RRAIHLLPSEGSLYRDLATAMEYMLNLKKPSRPSQTRWFETEIIVCCGLQHDGSNADMWV
SLALVTQHKGLRQHALIQALRLDANHAIAWAYLGQLYLSLGEQVLAQQSFDRARSADPTL
SLPWAGMALIHYNLSQRTASKDQALEAFASCSCAVQLSCVNLALQHASQRQPLQAAAHNL
RGLSCESRKDYMPAVVAYRNSRSAATKALLSSELQTLITANLARTLCKAGNAKDAVLEYN
KLRDSASLDDLDDIRSYAVALRDSGQGAQAEVLIKKALTARTPHDSRAHAPDILFLDEEL
CLTALSLALSTCRTDRISAAISRCRYLFTSKYAADAYVLIASMNQLLICYQAEVIPDLKR
ALHCYPTSGILRAKLGEIILSHGSHDHGSTSKLVERLCSMSSLISDDRLTQKLSSLVLVD
ATVACAAEVKVLSRRFTFDTCCLCRLVHREPWNMKARYCLILVLLGGARRQGFPRHLCHT
ILRISTTTLYHLPSSSDRQAAYMRMQIELCVSESELRLGNYTCALDRAVASLNAIKGFSD
LNAAPAYLQLARCYRLLNDLSHLVKGAVAGWQQQTDVKRDNALWHLSLLELQLCCGVIKE
EDSVLLRLRHLLQQSKQGWLALLEVMLARFYYQRGEPELSEDAAANALLWWPNNPVLCLF
HGAVSLELAKSGKGASYASKAVSSLGKAVRDKGRELPTAYALLAQAESSGSKDGSNRAGV
VKKWAKHLRAAFLAWPTTGTTTQVCHCCFRLFHCFLQNIQYQQRCFSSWLYYPSSK
NT seq
3231 nt
NT seq
+upstream
nt +downstream
nt
ggacgcgtttattgggaaaccgaagatatgaaggagaaagcagcacacgaatttgttgaa
tctgcaaaacttgaccccagtcgagctgatacgttcatctacttgggccactactacaga
gagcttgcaaaagatcttcgaagggcagttcgctgctaccaaaaggctgtggctttggac
gccgaaaatgaagcgacgggagaaatgctttgtgacatccttgatcatggggggcagttt
tcaatggaaaagaacatttgtgaagaggcttcaaaaaaatcacctcgtgcattttgggca
tggcggcgtcttggatttattcaggtagcggaacggaagtggtcagaggcaatatcgagc
acgcaatatggtcttcgcggatatccgactgattcccgcctttgggaggctctagcactg
tcctataaaaggctaggcatgcttactgccgcgtcgaaggcttttggtcgtgcatttgac
cttgacaacagtagcctgttcgctgctcttgaaatgggagctatcgaccttgccttgtcc
gcattttctaaggtgttttgttcttctactgcgtatcgtgaagccttgcgtatctctcct
ggtgagctcattgctattcatggcctcgtatcttccttacttggtcaagctcgggagtgc
tttactcagggtgcgttttggtggtgtgctacaatcttgaaggccacaagttttttaact
caaggctctcaggaggcaattgatttagccattggaagcaggtcgatgtatgggcatttg
ttgatgtacgcgcagtcgttgccttttgaatcagcagatccgcagagatcttggcaagag
gctgttgactcgtggtacagtgaacgagtagatgctgcgaataatgctgtgcatgcgtat
cgacgtgcaatccatttgctaccaagcgaagggagtctgtatcgtgatcttgcaaccgca
atggagtatatgttgaatttaaagaaaccttccagaccctcacaaacaagatggttcgaa
acggaaattattgtctgctgtggtttgcaacacgatggatcgaacgcggacatgtgggtg
tctctagctctcgtcactcaacacaaaggactccggcagcatgctcttattcaggctctc
cgacttgatgcaaaccatgcaattgcatgggcttatctaggccaactctatttgagtttg
ggtgagcaagtcctggcgcaacaatcattcgatagagctcgaagtgcagatccaacttta
tcattgccatgggccggaatggcactcatccattataatttaagccagagaactgcctcg
aaggatcaggctttagaagcgttcgcaagctgttcctgtgctgtgcaactctcatgtgtg
aatttggctctgcaacatgcatctcaaagacagccattacaagcagcagcacataatctg
cgagggctgtcatgtgagtccagaaaggattacatgccagctgttgtagcgtataggaat
tcccgttctgcagctacaaaagcattactatctagtgagcttcagactcttattacggcg
aatcttgctcgaactttatgcaaggctggaaatgcgaaggatgcagttctggagtataac
aagcttcgtgattccgcttcgttagatgacttggatgatatccgaagctatgcagttgca
ttaagggactcgggacaaggagctcaggcggaggtactcataaagaaggcactaaccgca
agaacaccacacgacagcagagcacatgctcctgacatactctttttggacgaagaactt
tgcttgacggctctttcgctggcactctctacctgtagaacagatcggatttctgcagcc
attagtcgatgccgttatctattcacttcaaagtacgcagcagatgcgtacgtgctaatt
gcatcaatgaaccagctgttgatttgctatcaggctgaggtaattccggacttgaaaaga
gcactgcattgttaccccacgagtggcatcttgagagcaaagctgggagagattattctt
tctcatggttctcatgatcatggttcaacttcaaaactggtggaacgattgtgcagcatg
agctctctgatttcagatgacaggctgacgcagaagttgagttcgttggttcttgttgat
gctacggttgcgtgcgctgcagaggtgaaggttttatcccgtcgtttcacatttgacact
tgctgtctttgcaggctggttcaccgcgagccctggaacatgaaggcacgatattgcttg
atactggttttgcttggtggtgcgcgaagacaaggctttcctcgtcatctctgccatact
atactacgaatatcgacaactactctgtaccatctcccttcttcctctgatcgtcaggct
gcctacatgcgaatgcagatagagctttgtgtgtcggagagtgagctgaggctcggcaac
tacacttgcgctcttgaccgagccgtggcatctctcaacgccatcaaggggttctcagat
ctcaacgcggctcctgcgtacctccagcttgctcgctgctatcgtctactcaacgacttg
tctcatttagtaaaaggagcagtggcagggtggcagcagcaaacagatgtaaaacgagac
aatgctctttggcacttgtcactgctggagctgcagctatgctgtggagtgatcaaagag
gaagacagtgtgttactcaggctcaggcatttgctgcaacagtccaagcagggatggtta
gcacttctcgaagtgatgctagcacgcttttattatcaaaggggtgagccagagctatca
gaggatgctgcagccaatgcattgctatggtggccaaacaatccagtgttgtgtctcttc
catggtgcggtatctttggagctggcaaagtcggggaagggagccagctatgcatctaag
gctgtttcaagccttggaaaagcggtgcgagacaagggtagagagcttccgacagcatac
gctcttctagctcaagccgagtcaagcggcagcaaagatggatcgaatcgggcaggtgtg
gtaaaaaaatgggccaagcacctgcgagcagcgttcctggcatggcctacaacaggtact
actacacaagtgtgtcattgttgctttcgtttatttcattgtttcttacagaacatccag
taccagcagagatgtttttcctcatggctttactatccaagcagcaagtag
DBGET
integrated database retrieval system