KEGG   Selaginella moellendorffii: SELMODRAFT_115934
Entry
SELMODRAFT_115934 CDS       T01496                                 
Name
(RefSeq) hypothetical protein
  KO
K12600  superkiller protein 3
Organism
smo  Selaginella moellendorffii
Pathway
smo03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:smo00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    SELMODRAFT_115934
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:smo03019]
    SELMODRAFT_115934
Messenger RNA biogenesis [BR:smo03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Ski complex
     SELMODRAFT_115934
SSDB
Motif
Pfam: TPR_1 TPR_2 TPR_17 TPR_11 TPR_14 TPR_8 TPR_12 TPR_CcmH_CycH TPR_19 TPR_16
Other DBs
NCBI-GeneID: 9635936
NCBI-ProteinID: XP_002982125
JGI: 115934
UniProt: D8SFV6
LinkDB
Position
Unknown
AA seq 1076 aa
GRVYWETEDMKEKAAHEFVESAKLDPSRADTFIYLGHYYRELAKDLRRAVRCYQKAVALD
AENEATGEMLCDILDHGGQFSMEKNICEEASKKSPRAFWAWRRLGFIQVAERKWSEAISS
TQYGLRGYPTDSRLWEALALSYKRLGMLTAASKAFGRAFDLDNSSLFAALEMGAIDLALS
AFSKVFCSSTAYREALRISPGELIAIHGLVSSLLGQARECFTQGAFWWCATILKATSFLT
QGSQEAIDLAIGSRSMYGHLLMYAQSLPFESADPQRSWQEAVDSWYSERVDAANNAVHAY
RRAIHLLPSEGSLYRDLATAMEYMLNLKKPSRPSQTRWFETEIIVCCGLQHDGSNADMWV
SLALVTQHKGLRQHALIQALRLDANHAIAWAYLGQLYLSLGEQVLAQQSFDRARSADPTL
SLPWAGMALIHYNLSQRTASKDQALEAFASCSCAVQLSCVNLALQHASQRQPLQAAAHNL
RGLSCESRKDYMPAVVAYRNSRSAATKALLSSELQTLITANLARTLCKAGNAKDAVLEYN
KLRDSASLDDLDDIRSYAVALRDSGQGAQAEVLIKKALTARTPHDSRAHAPDILFLDEEL
CLTALSLALSTCRTDRISAAISRCRYLFTSKYAADAYVLIASMNQLLICYQAEVIPDLKR
ALHCYPTSGILRAKLGEIILSHGSHDHGSTSKLVERLCSMSSLISDDRLTQKLSSLVLVD
ATVACAAEVKVLSRRFTFDTCCLCRLVHREPWNMKARYCLILVLLGGARRQGFPRHLCHT
ILRISTTTLYHLPSSSDRQAAYMRMQIELCVSESELRLGNYTCALDRAVASLNAIKGFSD
LNAAPAYLQLARCYRLLNDLSHLVKGAVAGWQQQTDVKRDNALWHLSLLELQLCCGVIKE
EDSVLLRLRHLLQQSKQGWLALLEVMLARFYYQRGEPELSEDAAANALLWWPNNPVLCLF
HGAVSLELAKSGKGASYASKAVSSLGKAVRDKGRELPTAYALLAQAESSGSKDGSNRAGV
VKKWAKHLRAAFLAWPTTGTTTQVCHCCFRLFHCFLQNIQYQQRCFSSWLYYPSSK
NT seq 3231 nt   +upstreamnt  +downstreamnt
ggacgcgtttattgggaaaccgaagatatgaaggagaaagcagcacacgaatttgttgaa
tctgcaaaacttgaccccagtcgagctgatacgttcatctacttgggccactactacaga
gagcttgcaaaagatcttcgaagggcagttcgctgctaccaaaaggctgtggctttggac
gccgaaaatgaagcgacgggagaaatgctttgtgacatccttgatcatggggggcagttt
tcaatggaaaagaacatttgtgaagaggcttcaaaaaaatcacctcgtgcattttgggca
tggcggcgtcttggatttattcaggtagcggaacggaagtggtcagaggcaatatcgagc
acgcaatatggtcttcgcggatatccgactgattcccgcctttgggaggctctagcactg
tcctataaaaggctaggcatgcttactgccgcgtcgaaggcttttggtcgtgcatttgac
cttgacaacagtagcctgttcgctgctcttgaaatgggagctatcgaccttgccttgtcc
gcattttctaaggtgttttgttcttctactgcgtatcgtgaagccttgcgtatctctcct
ggtgagctcattgctattcatggcctcgtatcttccttacttggtcaagctcgggagtgc
tttactcagggtgcgttttggtggtgtgctacaatcttgaaggccacaagttttttaact
caaggctctcaggaggcaattgatttagccattggaagcaggtcgatgtatgggcatttg
ttgatgtacgcgcagtcgttgccttttgaatcagcagatccgcagagatcttggcaagag
gctgttgactcgtggtacagtgaacgagtagatgctgcgaataatgctgtgcatgcgtat
cgacgtgcaatccatttgctaccaagcgaagggagtctgtatcgtgatcttgcaaccgca
atggagtatatgttgaatttaaagaaaccttccagaccctcacaaacaagatggttcgaa
acggaaattattgtctgctgtggtttgcaacacgatggatcgaacgcggacatgtgggtg
tctctagctctcgtcactcaacacaaaggactccggcagcatgctcttattcaggctctc
cgacttgatgcaaaccatgcaattgcatgggcttatctaggccaactctatttgagtttg
ggtgagcaagtcctggcgcaacaatcattcgatagagctcgaagtgcagatccaacttta
tcattgccatgggccggaatggcactcatccattataatttaagccagagaactgcctcg
aaggatcaggctttagaagcgttcgcaagctgttcctgtgctgtgcaactctcatgtgtg
aatttggctctgcaacatgcatctcaaagacagccattacaagcagcagcacataatctg
cgagggctgtcatgtgagtccagaaaggattacatgccagctgttgtagcgtataggaat
tcccgttctgcagctacaaaagcattactatctagtgagcttcagactcttattacggcg
aatcttgctcgaactttatgcaaggctggaaatgcgaaggatgcagttctggagtataac
aagcttcgtgattccgcttcgttagatgacttggatgatatccgaagctatgcagttgca
ttaagggactcgggacaaggagctcaggcggaggtactcataaagaaggcactaaccgca
agaacaccacacgacagcagagcacatgctcctgacatactctttttggacgaagaactt
tgcttgacggctctttcgctggcactctctacctgtagaacagatcggatttctgcagcc
attagtcgatgccgttatctattcacttcaaagtacgcagcagatgcgtacgtgctaatt
gcatcaatgaaccagctgttgatttgctatcaggctgaggtaattccggacttgaaaaga
gcactgcattgttaccccacgagtggcatcttgagagcaaagctgggagagattattctt
tctcatggttctcatgatcatggttcaacttcaaaactggtggaacgattgtgcagcatg
agctctctgatttcagatgacaggctgacgcagaagttgagttcgttggttcttgttgat
gctacggttgcgtgcgctgcagaggtgaaggttttatcccgtcgtttcacatttgacact
tgctgtctttgcaggctggttcaccgcgagccctggaacatgaaggcacgatattgcttg
atactggttttgcttggtggtgcgcgaagacaaggctttcctcgtcatctctgccatact
atactacgaatatcgacaactactctgtaccatctcccttcttcctctgatcgtcaggct
gcctacatgcgaatgcagatagagctttgtgtgtcggagagtgagctgaggctcggcaac
tacacttgcgctcttgaccgagccgtggcatctctcaacgccatcaaggggttctcagat
ctcaacgcggctcctgcgtacctccagcttgctcgctgctatcgtctactcaacgacttg
tctcatttagtaaaaggagcagtggcagggtggcagcagcaaacagatgtaaaacgagac
aatgctctttggcacttgtcactgctggagctgcagctatgctgtggagtgatcaaagag
gaagacagtgtgttactcaggctcaggcatttgctgcaacagtccaagcagggatggtta
gcacttctcgaagtgatgctagcacgcttttattatcaaaggggtgagccagagctatca
gaggatgctgcagccaatgcattgctatggtggccaaacaatccagtgttgtgtctcttc
catggtgcggtatctttggagctggcaaagtcggggaagggagccagctatgcatctaag
gctgtttcaagccttggaaaagcggtgcgagacaagggtagagagcttccgacagcatac
gctcttctagctcaagccgagtcaagcggcagcaaagatggatcgaatcgggcaggtgtg
gtaaaaaaatgggccaagcacctgcgagcagcgttcctggcatggcctacaacaggtact
actacacaagtgtgtcattgttgctttcgtttatttcattgtttcttacagaacatccag
taccagcagagatgtttttcctcatggctttactatccaagcagcaagtag

DBGET integrated database retrieval system