Selaginella moellendorffii: SELMODRAFT_120828
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Entry
SELMODRAFT_120828 CDS
T01496
Name
(RefSeq) hypothetical protein
KO
K14399
polyribonucleotide 5'-hydroxyl-kinase [EC:
2.7.1.78
]
Organism
smo
Selaginella moellendorffii
Pathway
smo03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
smo00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
SELMODRAFT_120828
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smo03019
]
SELMODRAFT_120828
Enzymes [BR:
smo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.1 Phosphotransferases with an alcohol group as acceptor
2.7.1.78 polynucleotide 5'-hydroxyl-kinase
SELMODRAFT_120828
Messenger RNA biogenesis [BR:
smo03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
SELMODRAFT_120828
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CLP1_P
Clp1
CLP1_N
nSTAND3
ABC_tran
MMR_HSR1
Motif
Other DBs
NCBI-GeneID:
9644939
NCBI-ProteinID:
XP_002984679
JGI:
120828
UniProt:
D8SMS0
LinkDB
All DBs
Position
Unknown
AA seq
440 aa
AA seq
DB search
MSSDGNLAPGDAVRRFELRKESELRVEVGVDGPLRMQLVAGTAEIFGTELPPQYWLTFSP
SQKFAVFTWGGALLELDGVSEVAYVADETPMVSYVNVHAVLENRRRRAREAAISLHNAPG
EIPNPLTQGPRVMVVGPTDSGKSSLTKMLLGWAARQQWKPMYVDLDIGQGSITLSGAIAA
TPVETPVDPVEGIILDVPLVYFYGHTTPSINTELYKILVKELAHQLDLQFASNIATRSSG
MVINTMGWVDGVGYELLLHSIEALNANVILVLGQEKVYSMLHDYLRLKPGVDVVKLQKSG
GVVARNQKYRQQSRFTRTKNYFYGRWNELSPHASVVNFQDIQVVRIGGGPQAPRSALPIG
AEPTADPTRVVPVSINRDLVHAVLGVSYSKDPDQVLACNVAGFVYVTEVDLNRKKLTYVA
PCPGPLPSNILIAGSLLWVE
NT seq
1323 nt
NT seq
+upstream
nt +downstream
nt
atgtcttccgatggcaatctcgcgcctggcgatgcggtgcggagatttgagctccgcaag
gagagcgagctgcgcgtcgaggtaggcgtcgatgggccgctcaggatgcagctcgtggct
ggcacggcggagattttcggcaccgagctccctccacagtactggctcactttctctccc
tcacaaaaatttgctgtttttacgtggggtggtgcgcttctggagctcgatggcgtatca
gaggttgcctatgtcgctgatgagacaccgatggtgagctacgtcaatgttcatgcggtg
cttgaaaacaggcgcaggagagctcgcgaagcagcaatttctcttcacaacgctccaggc
gagattccaaatccactcacgcagggaccgagagtgatggttgtcggcccgactgattct
ggaaagagcagtcttacaaagatgctccttggctgggctgctcgtcagcaatggaaacca
atgtacgtcgacctcgatattggtcaaggatctatcacgctctcgggagcaatcgctgca
actcccgtcgagacgcctgttgatcccgtggaagggataattctggatgtccctcttgtt
tacttttatggtcacaccactcccagcataaacactgaattgtataaaattctggtgaaa
gaactcgcgcatcaactggatctacagtttgcatcgaacatagcaactcgctcttctgga
atggttatcaacaccatgggctgggtcgatggtgttggttatgagctgcttctacattcc
atcgaggcattaaatgctaatgtcattttggttttgggccaggagaaagtgtacagtatg
ctgcatgattatttgagattaaagcctggcgtagatgttgtcaagcttcaaaagtccggt
ggtgtggtggctcgcaaccagaagtacaggcagcaaagtcgtttcacgcgaacaaagaac
tacttctatggtcgatggaatgaactatcacctcatgcctccgttgtgaactttcaagac
atccaagtcgtccgcattggtggcgggcctcaggctcctcgttccgctcttcccatcggt
gccgagcctaccgcggatcctaccagagttgtccctgttagcattaaccgagaccttgtc
cacgcagtacttggagtttcctacagcaaagatccagatcaagtccttgcatgtaacgtt
gccggatttgtctacgtcactgaagtagatcttaacaggaagaaacttacgtatgttgct
ccctgccctgggcctcttccaagcaatatacttattgcaggatccttgctatgggtggag
tga
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