KEGG   Selaginella moellendorffii: SELMODRAFT_121188
Entry
SELMODRAFT_121188 CDS       T01496                                 
Name
(RefSeq) hypothetical protein
  KO
K10756  replication factor C subunit 3/5
Organism
smo  Selaginella moellendorffii
Pathway
smo03030  DNA replication
smo03410  Base excision repair
smo03420  Nucleotide excision repair
smo03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:smo00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    SELMODRAFT_121188
   03410 Base excision repair
    SELMODRAFT_121188
   03420 Nucleotide excision repair
    SELMODRAFT_121188
   03430 Mismatch repair
    SELMODRAFT_121188
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:smo03032]
    SELMODRAFT_121188
   03036 Chromosome and associated proteins [BR:smo03036]
    SELMODRAFT_121188
   03400 DNA repair and recombination proteins [BR:smo03400]
    SELMODRAFT_121188
DNA replication proteins [BR:smo03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    SELMODRAFT_121188
  DNA Replication Termination Factors
   ELG1-RFC complex
    SELMODRAFT_121188
Chromosome and associated proteins [BR:smo03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    SELMODRAFT_121188
DNA repair and recombination proteins [BR:smo03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     SELMODRAFT_121188
  Check point factors
   HRAD17(Rad24)-RFC complex
    SELMODRAFT_121188
SSDB
Motif
Pfam: RFC_C RCF1-5-like_lid DNA_pol3_delta2 AAA Rad17 AAA_22 Sigma54_activ_2 Mg_chelatase AAA_5 RuvB_N AAA_16 RsgA_GTPase AAA_29 ATPase_2 AAA_30 ABC_tran FhaA_N DUF815 SprT-like TsaE nSTAND3 PIN_4
Other DBs
NCBI-GeneID: 9648595
NCBI-ProteinID: XP_002984782
JGI: 121188
UniProt: D8SN98
LinkDB
Position
Unknown
AA seq 354 aa
MLWVDKYRPHTLDEAIVHQEQAQRLKSLIAEGDCPHLLFYGPSGAGKKTLIMAFLRELFG
AGAQQVQVENKAWKVEAGTRKIDVELTTVASNYHVELNPSDAGFQDRYVVQEIIKEMAMS
RPLDLGVDISFKVLVLNEVDRLSKEAQHSLRRTMEKYSAACRLILCCTSASKVIEAVRSR
CLNVRINAPSEDEITKVLQFVAKKEEIRLPPAFAGRIALHSNRNLRRAILSLEACKVQQY
PFTENQPVQTTDWEQYIVEIASDIVNEQSPKRLFIVRGKLYELLVNCIPPEIVLKRLLVE
LMKKLDSELKHEVCHWAAYHEHRMQLGQKAIFHLEAFVAKFMSVYKKFLIATFG
NT seq 1065 nt   +upstreamnt  +downstreamnt
atgttgtgggtggacaagtaccgccctcacactctggacgaggcgatcgtccaccaagag
caagcgcagcgcctcaagagcctgatagccgaaggagattgcccgcatttgctcttctat
gggccctctggcgctggaaagaagacacttatcatggctttcttgcgagagctctttggc
gctggggctcagcaggttcaagttgagaacaaggcctggaaagtcgaggccggaacgagg
aaaatcgacgttgagctgaccacagtggcgagcaactaccacgtcgagcttaatcccagc
gatgcgggatttcaagatcggtacgtggttcaagagatcatcaaggagatggccatgagc
aggcctctcgatctgggtgttgacataagtttcaaagttctcgtccttaacgaagtggat
cgcctctcgaaggaggcgcagcattcactcaggcgaacgatggagaagtatagcgccgcc
tgccgattgatcctttgctgcacaagtgcttccaaagttatcgaggctgttcgatcgcga
tgcctcaacgtgcggatcaatgctccatctgaagatgaaatcactaaagtgctccagttc
gtcgctaaaaaggaagagatacgtcttccaccggcttttgctggtcgaattgcgttacat
tcgaacaggaacctacggcgagccatactttcattggaggcctgcaaagtccaacagtat
ccgttcacagagaatcaacctgttcagaccaccgattgggagcaatatattgtagagatc
gcatcggacatagtcaatgaacagagcccgaagagattgttcatcgtgcgtggaaagcta
tacgagctgcttgtgaattgtatccctcctgaaatagttttaaagaggctacttgtcgag
ctaatgaagaaactagactcggagctaaagcacgaggtgtgtcactgggcagcctatcac
gaacatcgtatgcaacttggacagaaggctatttttcatctcgaagcctttgtcgccaag
tttatgagcgtttacaagaaattcctgatagcaacctttggttag

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