Selaginella moellendorffii: SELMODRAFT_122696
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Entry
SELMODRAFT_122696 CDS
T01496
Name
(RefSeq) hypothetical protein
KO
K14829
pre-rRNA-processing protein IPI3
Organism
smo
Selaginella moellendorffii
Brite
KEGG Orthology (KO) [BR:
smo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
smo03009
]
SELMODRAFT_122696
Ribosome biogenesis [BR:
smo03009
]
Eukaryotic type
Pre-60S particles
5-FMC complex
SELMODRAFT_122696
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40
WD40_Prp19
Beta-prop_EML_2
WD40_CDC20-Fz
WD40_WDHD1_1st
WDR55
WD40_MABP1-WDR62_1st
Beta-prop_TEP1_2nd
EIF3I
Beta-prop_EML
NBCH_WD40
Beta-prop_TEP1_C
Beta-prop_WDR90_POC16_2nd
ANAPC4_WD40
WD40_MABP1-WDR62_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_VPS8
WDR90_beta-prop_4th
Beta-prop_WDR75_1st
Beta-prop_WDR19_1st
Beta-prop_HPS5
Beta-prop_IFT122_1st
Beta-prop_IFT140_1st
Beta-prop_SCAP
WDR54
VPS8_N
Beta-prop_DCAF12
Motif
Other DBs
NCBI-GeneID:
9640122
NCBI-ProteinID:
XP_002985676
JGI:
122696
UniProt:
D8SQZ5
LinkDB
All DBs
Position
Unknown
AA seq
479 aa
AA seq
DB search
VIACSNLDAGVTVWDLASGVPLSHLRSCAAPRNALACVGHHFLAASQIHKTANNAGGAIF
FWTWHKNQVAFKSYPVEPIEPLACTADGVYLAGGGSSGRIYLWEVSSGRLLRVWAGHYKA
VKCLVFSDDDSLLISGAEDGLVNVYPLVRALDSIEEAGETQVPYMHKWSDHTLPVTGLLA
GSGGSSAIIVSCSLDHTCKIWSLALGALLRSILFPTPINAVALDPGEYALYAGGVDGRIF
ITALNFGVPSGSGLHSADGLLGADGIGHRFRAITALAFSMDGVSLVSGSEDCTVRLWDTV
SRQVLRTFSHSKGDRPNSLLVIPRPSSLLSSTDQQGRQINRRLPTLPVVPLSKYVTVESV
AQDFKPWEGPPVVLPLTYPADDEDAEGYSHSMVAMGRQIRELEQQGSTAAMQMELERLRS
ELRRALNNGQQWQQLHQELYCFCVDELMGGNRDREDDDGENKERTKGRASKVGDKMRDK
NT seq
1440 nt
NT seq
+upstream
nt +downstream
nt
gtgatcgcctgctccaatctggatgctggcgtgacggtgtgggatttggcgtcgggcgtg
ccgctgtcgcacctccgatcgtgcgcggcgccgcgcaatgccttggcgtgtgttggacat
catttcctggcggcatcgcagatccacaagactgctaacaatgccggcggcgcgatcttc
ttctggacctggcacaagaaccaagtggctttcaagagctatcccgtggagccgatcgag
cccctagcttgcactgccgatggagtttacttggcgggaggaggatcgtcgggaagaatt
tatctctgggaggtctcgagtggaagattgctgcgagtgtgggccgggcactacaaagcc
gtcaagtgtctcgtcttctccgacgatgattcgctactcatctctggtgccgaggatgga
cttgtcaatgtctatcctctcgtgagggccctggacagcatcgaagaagccggggagacc
caggtaccttacatgcacaaatggtcggatcacacacttccagtcactggattgctggcc
ggctctggtggttctagcgcgatcatcgtctcgtgctcactagaccacacctgcaagata
tggagcttggctctcggagctctactccggtcgatactcttccccactcccatcaatgct
gttgcacttgatccaggggagtacgcgctctacgccggtggagtcgatggcaggattttt
atcacggctctaaacttcggtgttccatcggggtctggcttgcattccgcggatgggcta
ctcggtgctgacgggatcggccacaggttccgtgctattactgctctagcatttagcatg
gatggggtgtcgctcgtctctggctccgaggactgcactgtccggttgtgggacaccgtg
agccgccaggttcttcggacgttttctcacagcaaaggtgaccgaccaaacagccttttg
gtgataccacggccctcgtccctgctcagctctacagatcagcaaggccgtcaaatcaac
cgtcgcttaccaacgcttccagtggttccgttgagcaagtacgtaacagtcgagtcagtg
gcacaagacttcaagccttgggaaggccccccggttgtccttccgttaacttatcctgct
gatgacgaggatgccgagggttactctcacagtatggtcgccatgggaagacaaataaga
gaactagagcaacaaggctccacggcagcgatgcaaatggagctggagagattgcgatcg
gagctccggcgggctctaaacaatggccagcagtggcagcaattgcaccaagaactttac
tgtttctgcgtggacgaattgatgggtgggaaccgggacagggaagacgacgacggagag
aacaaggaaagaaccaagggaagagccagcaaggtgggggacaagatgcgtgacaagtaa
DBGET
integrated database retrieval system