Selaginella moellendorffii: SELMODRAFT_128612
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Entry
SELMODRAFT_128612 CDS
T01496
Name
(RefSeq) hypothetical protein
KO
K14809
ATP-dependent RNA helicase DDX55/SPB4 [EC:
5.6.2.7
]
Organism
smo
Selaginella moellendorffii
Brite
KEGG Orthology (KO) [BR:
smo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
smo03009
]
SELMODRAFT_128612
Enzymes [BR:
smo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SELMODRAFT_128612
Ribosome biogenesis [BR:
smo03009
]
Eukaryotic type
Pre-60S particles
Helicases
SELMODRAFT_128612
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
CTE_SPB4
ResIII
RNA_pol_Rpc4
Motif
Other DBs
NCBI-GeneID:
9639328
NCBI-ProteinID:
XP_002988684
JGI:
128612
UniProt:
D8SZE1
LinkDB
All DBs
Position
Unknown
AA seq
594 aa
AA seq
DB search
MEVVTKIEFAALEPKLSPETLRVLEQQLGFLRATPVQVATIPLLCSFKDVAVDAATGSGK
TLAFVVPVVEILRRLATPFLQENVQVGAMIISPTRELASQIFGVAQKFVKTLENLTALLL
VGGTDVTADLERVKEQGGNVLIGTPGRLHDIMERSTALEFRHLEARTSDLSSLDTITSLF
IVSFQILILDEADRLLDMGFQRQVSAIIELLPKQRRTGLFSATQTQAVEELSKAGLRNPV
RVEVRSEVKGASTTFKTPAGLNIEYLECEGEEKSSQLVNFLRENASRKTIVYFMTCASVD
YWGTVLPRLKTLKDVPIVVLHGKMKQSVRVKALEKFTAMPAGVLFCTDVAARGLDIPGVD
WIVQYDPPQDPNVFVHRVGRTARMGRAGDALVFLLPKEDAYAEFLRIRNVPIEKRDKTEV
PHIIPKLRAAAMKDRDVMEKGLKAFVSYFRAYKEHHCTFIFQWKQLELGKIAMSFGLLQL
PSMPELKRGVLTSQHFTPVENIDVDSIPYREKAREKQRRKNLEKKPDTSREERKALAPSK
HQKDRPAKRAKKRSHRDREELEEINSDYRLLKKLKKGSISEKAYSKLMSLEGDV
NT seq
1785 nt
NT seq
+upstream
nt +downstream
nt
atggaggtcgtgacgaagatcgaattcgcggcgctggagccaaagctttcgccggagacg
ctccgggtgttagagcagcagcttggattcttgcgcgcgacgccagtccaggtcgcgacg
atccccctgctgtgcagcttcaaggatgtggccgtggatgccgctactggatccgggaaa
acgctcgcgttcgtggttcctgtcgtggagattctccgccgcctcgcgacgccattttta
caagagaatgtgcaggtgggagcgatgataatctctccaacgagggaattggcttctcag
attttcggtgtcgctcaaaagtttgtgaaaacgttggaaaatctcacggcattgttgctc
gtgggtggaaccgatgtcacagctgatctggagagagtgaaagagcaaggcgggaatgtg
ctcattggaacaccgggacgacttcatgatatcatggagcgatcgacagctttggagttt
cggcatctcgaggcaagaacttctgatctaagttctcttgacacgataacatctcttttc
attgtttctttccagattttgatcctcgatgaggctgacaggcttcttgacatgggcttt
cagcggcaagtatcagccatcatagaactcttgccaaagcaacgacgaacgggacttttc
tccgcaacacagacgcaggcagtggaggagctttcaaaggccgggttaagaaatcctgta
agagtggaggttcgcagtgaagtgaaaggagcgtcgactacctttaagacgcctgccggt
ttgaatattgagtacctggaatgtgaaggtgaggagaaatcttcgcagcttgtcaacttc
ttgcgagagaatgcctccaggaaaactattgtatatttcatgacctgtgcttctgtcgat
tactggggcactgtccttcctcggctcaagactctcaaggatgtaccgatagttgtactg
catgggaaaatgaaacaaagtgtcagagtaaaggctctagaaaaattcaccgctatgcct
gcgggagtgctgttttgtacagatgtggctgctcgtggactggacatacctggggtggat
tggatcgtgcagtatgatcctccccaagacccaaacgttttcgttcatagggtcggccga
actgccagaatgggaagagcgggagatgctttagtttttcttcttccaaaggaagacgct
tacgcagagttccttcgtataagaaacgtcccgatagaaaagagagacaaaactgaagtg
cctcatattatacccaagttacgggccgctgctatgaaggatagggacgtgatggagaaa
ggactcaaggcatttgtgtcctacttccgagcgtacaaagagcaccactgcacttttatc
ttccaatggaagcaactggaacttggcaagatcgccatgagcttcggtctattgcaactc
ccttccatgccagaactaaagcgtggtgtgctcacgtcgcagcattttactcctgtggag
aacattgacgtcgattccattccatatcgagagaaagctcgggagaagcaaaggaggaaa
aacctcgagaagaaaccagatacgtcgagagaagaaagaaaagctctggcaccatcgaag
caccaaaaggatcgtcccgcgaagagagcaaagaagcgctcgcacagagatagagaagaa
ctggaagagattaacagtgactacaggctcttgaaaaaattgaagaagggatctatctcc
gagaaagcatactcgaagctgatgagcttggaaggcgatgtatga
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