Selaginella moellendorffii: SELMODRAFT_145357
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Entry
SELMODRAFT_145357 CDS
T01496
Name
(RefSeq) hypothetical protein
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
smo
Selaginella moellendorffii
Brite
KEGG Orthology (KO) [BR:
smo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
smo03016
]
SELMODRAFT_145357
Enzymes [BR:
smo01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
SELMODRAFT_145357
Transfer RNA biogenesis [BR:
smo03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
SELMODRAFT_145357
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNB
CSD_RNase_II
HTH_RNase_II
RNase_II_C_S1
TPR_26
Motif
Other DBs
NCBI-GeneID:
9631180
NCBI-ProteinID:
XP_002968392
JGI:
145357
UniProt:
D8RAM4
LinkDB
All DBs
Position
Unknown
AA seq
668 aa
AA seq
DB search
MLVELVKDGKLVCAVVDRPEGKKNWIAIDQYGNSHSVKPGKVRYVVPDVETFKPEDIVEF
LKQTEAIQDLSLIEIAWHELVESEEKSISSKKLAKVLFGDVSHVEYYATHCMLSSKQVFF
RRKQKGPVVFYEPRSSAEVQELQHQYNVEETARMELVNFINMVKSALARSHDSKPSPTSW
SSEKFALARVEALQEFALDAFADETQKNLAKEVLEALGQQKSPESALDVLIGIGILPFHV
NVELLKSKIPTAFPDEHIAAAKLLEEEPCLDQNKDSRVDLTAMKVYTIDSDSTEEIDDGL
SATELPDGRVKIWIHIADPTRWVEPEHIIEREAKHRGTTVYLPEKTIPMFPMNLATGPMS
LRQNTECCAVSVSVILDKDGSIAESSVCSSVIKPSMRLSYDSATELIMYQLDEERELNLL
AKAARLRYEWRLSQGAVDLSTRQIEVKVTNPDSFEPEIKLQVIDMTSPSGQLVSEMMILC
GEAIAAYGNEKILALPYRGQSDMAVEMNCTKPLQHSSLGLPGYVQFTSPIRRYSDLLAHY
QVKAALRKKSPPLSSSQLEAAIMLANLKTKEARKLGNASSRYWLIEYLRRRPRDELYEAS
VVRVKDGQVVVSIKEVGLHTSVSTNVKLEAGDAVRVIVAAANPRKDILDVELVEVLNTED
ALDNVVAA
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
atgcttgtagagcttgtaaaagatggcaagcttgtttgtgcggttgtggataggccggaa
gggaagaagaactggattgccatagaccagtatggaaattcccactcggtgaagcctggg
aaagtaagatacgttgttccagatgtagaaacgtttaaaccagaagacatcgttgagttc
ctgaagcaaacggaagccatacaggacttgtctcttatagaaattgcatggcacgagctg
gttgagtcagaggagaaatccataagttcaaagaagctagccaaagtgctttttggggat
gtttcccatgttgagtactatgcaacgcattgtatgctatcttcaaagcaagtgttcttt
aggcgcaagcaaaaagggcctgttgtcttttatgaaccgcggtctagtgcagaggtgcag
gagttacaacaccagtataatgtcgaggaaaccgctcgaatggagctggtgaattttatc
aacatggtcaagtccgccttagcacggtctcatgattcaaagccatctcccaccagttgg
tcctcggaaaagttcgcgctcgcccgcgtagaagctctgcaggaatttgcgttagatgcg
tttgccgatgaaactcagaagaacttggcaaaagaggttttggaggccttgggacagcag
aagtctcctgaatctgctctagatgttttaatcggcataggtattcttccgtttcacgta
aatgtggaactgctaaagtccaaaattccgactgcttttcctgacgagcatattgcggct
gcaaagcttcttgaagaggagccatgtcttgatcaaaacaaggattctagagtcgattta
acagccatgaaggtttacaccattgattcagattctactgaagagatcgatgatggattg
agcgcgactgagctccccgacggtcgtgtgaaaatttggattcacattgcggatccgaca
agatgggtagagccggaacatataattgaaagagaagcaaaacaccgaggaacgaccgtt
tacctgccagagaaaacgattcccatgtttcccatgaacttagctactggaccgatgagc
cttaggcagaacacggaatgctgcgctgtgagtgtgtccgtcatcctcgacaaagatggc
agcattgcagagtcttcggtatgcagctcagtgataaaaccgtcgatgcgactctcgtat
gactctgcaacggagcttataatgtatcaactagacgaagagcgtgagctaaatttgctg
gcgaaggctgcccgactccgttatgaatggcgactttctcagggtgcagttgatttatcc
actcggcagatagaagtcaaagtaaccaatccagattcgtttgagcccgaaatcaagctt
caggtgatcgacatgaccagtccctctggacaacttgtttcagagatgatgattctgtgt
ggcgaggccatagctgcttacggcaacgagaagattctggctttgccatacagaggacag
tcagacatggctgtcgagatgaactgcaccaaaccgctacagcactctagcttgggccta
cctggatacgttcagtttacttctccaatcagacgatatagtgacttgttggcacactac
caggttaaagcagcccttcgcaaaaagtctccaccgcttagcagtagccagctcgaggca
gcgattatgctagccaacttgaaaacgaaggaggcgagaaaattgggaaacgcgtcctct
aggtactggcttattgagtatctgcggaggcggcccagggacgagctgtatgaagcgtcg
gtagtcagggtcaaagacggacaagttgtcgtctccatcaaggaggtgggattgcataca
tcggtgagcaccaacgtgaagctagaagctggtgatgccgttcgagttatagttgccgct
gctaatcctcggaaagatattttggacgtcgagctggtagaagtgttgaacaccgaggac
gcactagacaacgttgtagcagcttaa
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