Selaginella moellendorffii: SELMODRAFT_145521
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Entry
SELMODRAFT_145521 CDS
T01496
Symbol
DDB1-1
Name
(RefSeq) hypothetical protein
KO
K10610
DNA damage-binding protein 1
Organism
smo
Selaginella moellendorffii
Pathway
smo03420
Nucleotide excision repair
smo04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
smo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
SELMODRAFT_145521 (DDB1-1)
09124 Replication and repair
03420 Nucleotide excision repair
SELMODRAFT_145521 (DDB1-1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
smo04121
]
SELMODRAFT_145521 (DDB1-1)
03400 DNA repair and recombination proteins [BR:
smo03400
]
SELMODRAFT_145521 (DDB1-1)
Ubiquitin system [BR:
smo04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Adoptor protein
SELMODRAFT_145521 (DDB1-1)
DNA repair and recombination proteins [BR:
smo03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Cul4-DDB2 complex
SELMODRAFT_145521 (DDB1-1)
TCR (transcription coupled repair) factors
Cul4-CSA complex
SELMODRAFT_145521 (DDB1-1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_RSE1_1st
CPSF_A
Beta-prop_RSE1_2nd
Beta-prop_IFT122_1st
Motif
Other DBs
NCBI-GeneID:
9631378
NCBI-ProteinID:
XP_002968203
JGI:
145521
UniProt:
D8RBA1
LinkDB
All DBs
Position
Unknown
AA seq
1089 aa
AA seq
DB search
MSVWNYVVTAHKPTNVTHSCVGNFTSPHELNLIIAKCTRIEFHLLTAQGLQPLLDVPIYG
RIATLELFRPPGETQDVLFVSTERYKFCVLQWDSETTELVTRAMGDVSDRIGRPTDNGQI
GIVDPECRLIGLHLYDGLFKVIPIDNKGQLKEAFNIRLEELQVLDIKFLYGCSKPTIAVL
YQDNKDARHVKTYEIQLKEKDFGEGPWSQNNLDNGAGMLIPVPTPLGGVIIIGEQTIVYY
SGSAFKAIPIRPSITKAYGKVDADGSRYLLSDHTGSLHLLVITHERDRVLGLKVELLGET
SAASSLSYLDNGVVYVGSSYGDSQLIKLNAQVDSRNSYVEVLESFVNLGPIVDLCVVDLE
RQGQGQVVTCSGAYKDGSLRIVRNGIGINEQASAELQGIKGMWSLRATSKDVFDIFLVVS
FISETRILAMNMDDELEETEIEGFDSEAQTLFCHNAIHDQIIQVTSTSLRLVDATSRRQL
TEWRTPSAVAINVATANASQVLLATGGGNLVYIEIGRGSLTEVKHVQLQNEISCLDINPI
GTDPDRSNIAAVGMWTDISVQVFSLPNLEVLAKESLGGEIIPRSVLICAFEGVSYLLCAL
GDGHLFNFLIDTSNGQLSDRKKISLGTQPIMLRTFRSKNATHVFAASDRPTVIYSSNKKL
LYSNVNLKEVNHMCPFNSASFPDSLAIGKEGELTIGTIDDIQKLHIRTVALGEHPRRICH
QEQTRTFGLCTARFYSNPNGEDHESHFVKLLDDQTFEVLGSYNLDTFENGCTIITCSFTD
DPATYYCVGTAYALPEENEPSKGRILIFTVEDGKFQLVTEKETKGAVYNLNAFNGKLLAG
INQKIQLYKWTQRDSTRELQSECGHHGHILALYVQSRGDFIVVGDLMKSISLLLYKPEEG
AIEERARDYNANWMTAVEILDDDIYLGAENSFNLFTVRKNSDAATDEERGRLEVVGEYHL
GEFVNRFRHGSLVMRLPDNETSQIPTVIFGTVNGVIGVVASLQQEQFNFLQRLQHCLAKV
IKGVGGLSHEQWRSFSSERKNADAKNFLDGDLIESFLDLNRAKMDEVSAAMSVSVEELCK
RVEEMTRLH
NT seq
3270 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtctggaactacgtcgtcactgcgcacaagccgaccaatgtgacgcactcgtgc
gttggaaatttcacgagcccccacgagctcaatctcatcatcgcaaaatgtacacggatt
gaatttcacttgctcacagctcaaggtctccagcctcttttggacgtgccaatctatggc
cggattgcaaccttggagctcttcaggcctccgggagagacccaggatgtcctgttcgtc
tccacggagagatacaagttttgtgtcttacaatgggattcggagacgacggaacttgtc
acgagggcaatgggtgacgtttcagatcgaattggtcggccgacggataatggacagatt
ggcattgttgatccagagtgtaggctgattggtcttcacctctacgatggcttgttcaaa
gtaataccaatcgacaacaaaggacagctgaaagaggcgtttaacatcaggctggaagaa
ctgcaagtgctggacataaagttcctgtatggctgctcgaaaccaacaattgctgtcctt
taccaggacaacaaagatgctcgtcacgtcaaaacatacgagatacaactgaaagagaag
gactttggtgaggggccatggtcgcagaataacctcgacaatggagccggtatgcttatt
cccgtgccaacaccccttggtggcgttataataattggtgagcaaaccatcgtttactac
agcggttcagcattcaaggctattcccatccggccttcaatcacgaaagcatatgggaaa
gtggatgctgatggatcacggtatttgctcagtgatcatactggatcgctacatttgctt
gtgatcactcacgagagggacagggtactgggtttgaaagttgaactcctcggggagacc
tccgctgcatcaagtctttcctaccttgacaacggggttgtttatgttggctccagctac
ggggattcacagctcataaaactgaacgcgcaagtagactctagaaactcttatgtggag
gttctagagagttttgtcaatcttgggccaattgtcgatctctgcgtagtggacctggag
aggcaaggtcaagggcaagtagtgacgtgctctggtgcatacaaggatggatccttgcgt
attgtccgaaatggtatcggcatcaacgagcaggcctctgctgagcttcaaggtattaaa
ggcatgtggtctttacgagccacgtccaaggacgtctttgacatattcctggtggtcagt
ttcatcagcgagacaagaatcctggccatgaatatggatgatgaactcgaggaaactgag
attgaaggttttgattccgaagcacaaactcttttctgccataacgctattcacgaccag
attattcaggtaacttcgacttctttgaggctggttgatgccacttctcgacggcaattg
acggagtggagaactccgtctgcagttgcgataaacgtggccacagccaatgcttcgcag
gttcttctcgcgactggtggtggaaatcttgtttatattgaaatcggtcgcgggtctctg
acggaagtgaagcacgtacaactccagaatgagatatcgtgtctggatataaatccgatt
ggtaccgatcccgatcgtagcaatatagcagcggtgggaatgtggacggatatcagtgtg
caagtattttctttacccaaccttgaggttttggcgaaagaaagtctcggcggtgaaatt
ataccacgctcggttttaatatgtgcatttgaaggagtctcatatttgctttgcgcttta
ggagacggccatcttttcaattttctgatcgacaccagtaacggtcagctttccgacaga
aaaaagatttccttgggcacacagccgatcatgctccggactttcagatctaagaatgca
actcatgtgtttgcggcgtcggatcggcctacggtcatttacagtagcaacaagaagctg
ctttacagcaacgtgaatctgaaggaggtgaatcatatgtgtcctttcaactctgcatct
tttcccgacagcctggcaattggaaaggagggagagctcacaatcggaacgattgatgat
atccagaagctacatatacgcacggtggcacttggggaacaccctcgcaggatctgtcac
caggagcagactcggacgtttggcctttgcaccgcaaggttttatagcaacccaaacggg
gaggatcacgaaagccatttcgtaaagttgctggacgaccagaccttcgaagttttaggc
tcgtataacctggacacattcgagaacggctgcacgatcattacgtgcagcttcactgat
gacccggctacgtattattgcgttggaacggcctatgctctacccgaggaaaacgaacca
agcaagggacgtatattgatcttcactgtagaagatggcaagttccagctcgttactgag
aaggaaacgaaaggagctgtttacaatctaaacgccttcaacgggaagctgctagcgggc
atcaaccagaaaatccagctctacaaatggacacagcgggatagcactcgggagcttcag
tcggagtgcggtcaccacggccacatcctagcgctttacgtgcaatctcgcggagatttc
atcgtcgtgggcgatctcatgaagagcatatcgctacttctctacaagccggaggaagga
gcgatcgaagaacgcgcgcgggattacaacgcaaactggatgactgctgtggagatcctg
gacgacgacatctacctcggagccgagaacagcttcaacctcttcacggtgaggaagaac
agcgacgctgcgacggacgaggagagaggccggctggaagtggtgggagagtaccacctt
ggcgagtttgtcaaccggttccggcatggctcgctggtgatgcgcttgccggacaacgag
acgagccagatcccgactgtgatcttcggcaccgtcaacggagtgatcggagtggtggcc
tcgctccagcaagaacagttcaacttcctccagcggctccagcactgcctggccaaggtg
atcaaaggcgtcggggggctgagccacgagcagtggcgatcgtttagcagcgagaggaag
aacgccgacgccaagaacttcctcgacggcgatctcatcgagtcgttcctggatttaaac
cgggccaagatggacgaagtctcggcagccatgagcgtgtccgtggaagagctttgcaag
cgtgtagaggagatgacgaggttacactga
DBGET
integrated database retrieval system
