KEGG   Selaginella moellendorffii: SELMODRAFT_146823
Entry
SELMODRAFT_146823 CDS       T01496                                 
Name
(RefSeq) hypothetical protein
  KO
K12812  ATP-dependent RNA helicase UAP56/SUB2 [EC:5.6.2.7]
Organism
smo  Selaginella moellendorffii
Pathway
smo03013  Nucleocytoplasmic transport
smo03015  mRNA surveillance pathway
smo03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:smo00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    SELMODRAFT_146823
  09122 Translation
   03013 Nucleocytoplasmic transport
    SELMODRAFT_146823
   03015 mRNA surveillance pathway
    SELMODRAFT_146823
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:smo03019]
    SELMODRAFT_146823
   03041 Spliceosome [BR:smo03041]
    SELMODRAFT_146823
Enzymes [BR:smo01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     SELMODRAFT_146823
Messenger RNA biogenesis [BR:smo03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     SELMODRAFT_146823
Spliceosome [BR:smo03041]
 Complex C
  Other components
   EJC/TREX
    SELMODRAFT_146823
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    SELMODRAFT_146823
SSDB
Motif
Pfam: DEAD Helicase_C ResIII Cas3-like_C_2 CMS1
Other DBs
NCBI-GeneID: 9645580
NCBI-ProteinID: XP_002969825
JGI: 146823
UniProt: D8RFZ4
LinkDB
Position
Unknown
AA seq 428 aa
MGEAKENDTYQEELLDYEEEEEAAPDAVAAKGAAETVKKGYVGIHSSGFRDFLLKPELVR
AIVDCGFEHPSEVQFECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPLKGQVAALV
LCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKTHKDLLKNECPHIVVGTPGRILQ
LTREKELSLKGVRHFILDECDKMLESLDMRRDVQEIFKLTPHDKQVMMFSATLSKEIRPV
CKRFMQDPMEIYVDDEAKLTLHGLVQHYIKLSEAEKNRKLNDLLDALDFNQVVIFVKSVN
RAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGHKRILVATDLVGRGIDIERVNI
VINYDMPESADTYLHRVGRAGRFGTKGLAITFVASSTDSNVLNQVQERFEVDIKELPEQI
DTSTYMPS
NT seq 1287 nt   +upstreamnt  +downstreamnt
atgggtgaagccaaggagaacgacacttatcaggaggagcttttggactacgaggaggaa
gaagaagcggcccccgacgccgttgcagctaagggagcggcagaaacagtgaaaaagggc
tatgttggtattcacagctccggttttcgagactttctactcaagcctgaactcgttcga
gctatcgttgattgcggttttgagcatccatcagaagtgcaattcgagtgcatcccgcaa
gctatactcggaatggatgtcatctgccaagcgaagtccggaatgggaaaaactgccgtg
ttcgtgctttcaacgctgcagcagatcgagccactgaaggggcaagttgctgctctggtc
ttatgtcacacgcgagagctagcttaccagatttgccacgagttcgaacgattcagcact
tatcttccagacatcaaggttgcggttttctatggtggtgtcaacatcaagacccacaag
gacctcctcaaaaacgaatgcccccacatcgtcgtcggcacaccagggcgtattcttcag
ctgacgagggagaaggaactgagcctgaagggtgttaggcacttcatccttgatgagtgt
gacaagatgctggagtccctcgacatgaggcgcgacgtgcaggagatcttcaagctgaca
ccccacgacaagcaagtgatgatgttctcagccaccctcagcaaggaaattcgcccggtt
tgcaagcggttcatgcaagatcctatggagatctatgttgacgacgaagccaagctgact
ttgcacggactggtgcagcactacatcaaactaagtgaagctgagaaaaacaggaagctg
aacgatcttctggacgctttggacttcaaccaggtggtgattttcgtcaagagcgtgaac
cgtgcggcggagctgaacaagttgctggtggagtgcaatttcccttctatctgtatccac
tcgggaatgtcacaagaggaaaggttgacgaggtacaagggattcaaggaagggcacaag
cgaattcttgtggcgactgacttggtggggaggggcatagatattgagcgcgtgaacatc
gtgatcaactatgatatgccagaatccgcagatacttatttacatagggttggccgagct
ggacgattcggaacaaagggcttggccattacatttgtagcttcttcgactgactcgaac
gtgctaaatcaagttcaggagagatttgaagtagatattaaggagctgccagagcagatc
gatacctccacctacatgccgtcttag

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